Hg_chrom9_TN10mRNA_16847
Organism: Heterodera glycines Gene Locus: chr9:1955774-1958095 Feature type: polypeptideProtein Sequence
Length: 241
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 1.061 | 0.83 | 1.288 | 0.692 | 1.277 | 0.543 | 1.452 | 0.738 | 1.626 | 1.195 | 1.22 | 1.037 | 1.277 | 1.27 | 1.126 | 0.544 | 1.383 | 0.638 | 0.244 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15920
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.881
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PRSKRLK,PKKRPMKHPSAPFSRDSPRSKRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.873
|
0.183
|
0.042
|
0.272
|
0.030
|
0.019
|
0.014
|
0.018
|
0.023
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012530
|
1.000
|
1.000
|
Hsc_gene_429.t1
|
Hsc_gene_429.t1
|
— |
Q9XX15.1 Ribosomal RNA small subunit methyltransferase nep-1 [Caenorhabditis elegans]
|
KAI1721557.1 EMG1/NEP1 methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0070037|GO:0070475
|
GO:0008150_0.846|GO:0005575_0.686|GO:0110165_0.686|GO:0009987_0.667|GO:0005622_0.625|GO:0016020_0.612|GO:0043226_0.578|GO:0043229_0.567|GO:0043227_0.544|GO:0043231_0.531|GO:0071840_0.527
|
IPR005304+23-241_39-235+|IPR029026+37-241+|IPR029028+25-240+
|
— |
PF03587+39-235+EMG1/NEP1_methyltransferase
|
G3DSA:3.40.1280.10:FF:000003+37-241+Ribosomal_RNA_small_subunit_methyltransferase
|
PTHR12636+23-241+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28
|
1.000
|
29-241
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
26863.380
|
9.964
|
16.500
|
25.726
|
8.299
|
46.473
|
53.527
|
17.012
|
8.714
|
51.037
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
450.546
|
243.787
|
279.156
|
524.355
|
530.388
|
330.716
|
418.838
|
281.981
|
324.644
|
749.197
|
567.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.968
|
1.019
|
— |
-0.666
|
0.351
|
-0.334
|
0.713
|
— | — | — | — | — |
No JSON data available for plots.