Hg_chrom9_TN10mRNA_16848
Organism: Heterodera glycines Gene Locus: chr9:1958482-1959869 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 1.169 | 0.508 | 0.385 | 0.745 | 1.146 | 0.532 | 1.955 | 1.241 | 2.114 | 1.016 | 1.314 | 1.552 | 0.43 | 0.456 | 0.559 | 1.007 | 0.846 | 2.149 | 2.136 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15921
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
35-60
|
0.936
|
— | — | — | — |
0.000
|
— | — |
0.116
|
0.129
|
0.006
|
0.121
|
0.821
|
0.457
|
0.651
|
0.026
|
0.307
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012531
|
1.000
|
1.000
|
Hsc_gene_428.t1
|
Hsc_gene_428.t1
|
— |
Q5RE33.1 Receptor expression-enhancing protein 5 [Pongo abelii]
|
KAI1721599.1 TB2/DP1, HVA22 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.853|GO:0005575_0.736|GO:0110165_0.736|GO:0005886_0.682|GO:0016020_0.682|GO:0071944_0.682|GO:0009987_0.643|GO:0005622_0.612|GO:0005737_0.612|GO:0005773_0.579|GO:0043226_0.579|GO:0043227_0.579|GO:0043229_0.579|GO:0043231_0.579|GO:0012505_0.558
|
IPR004345+69-174_73-149+
|
— |
PF03134+73-149+TB2/DP1,_HVA22_family
|
— |
PTHR12300+69-174+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
20909.430
|
8.804
|
6.500
|
20.112
|
19.553
|
39.665
|
60.335
|
12.849
|
7.263
|
39.106
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
2390.487
|
3266.403
|
2321.148
|
1844.968
|
2125.313
|
2034.120
|
3189.284
|
4198.158
|
2239.605
|
1661.406
|
1909.206
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.721
|
-0.961
|
-0.224
|
0.172
|
— |
0.658
|
0.942
|
— | — | — | — | — | — |
No JSON data available for plots.