Hg_chrom9_TN10mRNA_16849
Organism: Heterodera glycines Gene Locus: chr9:1960597-1962871 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.836 | 1.306 | 0.619 | 1.597 | 0.461 | 0.642 | 0.898 | 0.665 | 1.295 | 1.27 | 1.409 | 0.998 | 0.576 | 0.733 | 1.283 | 0.982 | 1.179 | 0.921 | 1.057 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15922
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-34
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.080
|
0.958
|
0.006
|
0.135
|
0.024
|
0.036
|
0.059
|
0.017
|
0.059
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012532
|
1.000
|
1.000
|
Hsc_gene_427.t1
|
Hsc_gene_427.t1;Hsc_gene_427.t2
|
— |
Q9WY55.1 Glycine cleavage system H protein [Thermotoga maritima MSB8]
|
KAI1728947.1 glycine cleavage h-protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005960|GO:0019464
|
GO:0005575_0.857|GO:0110165_0.767|GO:0005622_0.723|GO:0005737_0.700|GO:0016020_0.630|GO:0043226_0.626|GO:0043229_0.604|GO:0043227_0.574|GO:0043231_0.562|GO:0008150_0.559
|
IPR000089+52-134+|IPR002930+29-157_32-155+|IPR003016+77-106+|IPR011053+34-156+|IPR017453+34-157+|IPR033753+36-156_37-133+
|
— |
PF01597+36-156+Glycine_cleavage_H-protein
|
— |
PTHR11715+29-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
147-167
|
1.000
|
1-146
|
9c19_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
18651.030
|
4.687
|
-6.500
|
30.539
|
10.180
|
50.898
|
49.102
|
13.772
|
16.766
|
51.497
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2629.582
|
2310.410
|
1609.151
|
1922.603
|
2656.000
|
1915.490
|
2216.952
|
1522.578
|
3454.263
|
3606.278
|
3541.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.753
|
-0.402
|
0.366
|
0.434
|
-0.457
|
0.221
|
-0.434
|
0.684
|
— | — | — | — | — |
No JSON data available for plots.