Hg_chrom9_TN10mRNA_16850
Organism: Heterodera glycines Gene Locus: chr9:1963390-1965272 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 0.788 | 1.156 | 1.461 | 0.918 | 0.652 | 0.858 | 1.059 | 1.13 | 1.202 | 1.22 | 1.745 | 1.883 | 1.141 | 0.778 | 0.787 | 0.764 | 0.899 | 0.978 | 0.623 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15923
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.664
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
23-57
|
0.993
|
— | — |
0.000
|
— | — |
0.101
|
0.941
|
0.005
|
0.306
|
0.053
|
0.041
|
0.043
|
0.008
|
0.051
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012533
|
1.000
|
1.000
|
Hsc_gene_426.t1
|
Hsc_gene_426.t1
|
— |
Q21824.1 Probable peroxiredoxin prdx-3 [Caenorhabditis elegans]
|
KAI3413440.1 peroxiredoxin [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016209|GO:0016491|GO:0051920
|
GO:0008150_0.863|GO:0009987_0.804|GO:0003674_0.779|GO:0005575_0.779|GO:0110165_0.776|GO:0005622_0.710|GO:0005737_0.706|GO:0050896_0.703|GO:0016020_0.607|GO:0051716_0.582|GO:0042221_0.552|GO:0043226_0.546|GO:0003824_0.539|GO:0006950_0.535|GO:0043227_0.535|GO:0008152_0.518|GO:0043229_0.509
|
IPR000866+51-180+|IPR013766+46-204+|IPR019479+201-233+|IPR036249+48-226+|IPR050217+50-235+
|
— |
PF00578+51-180+AhpC/TSA_family|PF10417+201-233+C-terminal_domain_of_1-Cys_peroxiredoxin
|
G3DSA:3.40.30.10:FF:000003+47-236+Peroxiredoxin_1
|
PTHR10681+50-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
5jcg_I
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
26285.470
|
7.208
|
2.500
|
25.847
|
12.288
|
41.949
|
58.051
|
13.983
|
11.864
|
50.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2371.341
|
1574.133
|
1546.610
|
2024.233
|
3290.901
|
2632.459
|
2840.171
|
1338.562
|
918.163
|
3968.343
|
2661.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.255
|
0.226
|
0.497
|
0.669
|
-0.307
|
— |
-1.083
|
1.229
|
-2.219
|
— | — | — | — |
No JSON data available for plots.