SCN Proteipedia

Hg_chrom9_TN10mRNA_16851

Organism: Heterodera glycines Gene Locus: chr9:1972338-1978100 Feature type: polypeptide

Protein Sequence

Length: 716

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.747	0.909	1.32	0.193	1.373	1.361	0.682	0.838	1.055	1.151	0.698	1.972	1.397	0.698	1.283	0.878	1.191	0.952	1.074	1.068	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15924	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.883

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRRDRR	1-40	0.992	—	—	—	—	0.194	—	—	0.099	0.151	0.027	0.171	0.136	0.225	0.201	0.008	0.699	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001449	1.000	4.000	Hsc_gene_425.t1;Hsc_gene_425.t2;Hsc_gene_425.t3;Hsc_gene_425.t4	Hsc_gene_424.t1;Hsc_gene_425.t1;Hsc_gene_425.t2;Hsc_gene_425.t3;Hsc_gene_425.t4	—	Q75NA5.2 Gamma-aminobutyric acid receptor subunit beta [Musca domestica]	KAI3413442.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.949\|GO:0009987_0.935\|GO:0005575_0.882\|GO:0051179_0.865\|GO:0006810_0.864\|GO:0051234_0.864\|GO:0110165_0.857\|GO:0005886_0.813\|GO:0016020_0.813\|GO:0071944_0.813\|GO:0055085_0.809\|GO:0006811_0.801\|GO:0034220_0.776\|GO:0003674_0.760\|GO:0065007_0.728\|GO:0050789_0.699\|GO:0005215_0.687\|GO:0022857_0.687\|GO:0015075_0.678\|GO:0015267_0.671\|GO:0022803_0.671\|GO:0005216_0.670\|GO:0098590_0.648\|GO:0030054_0.642\|GO:0007154_0.630\|GO:0022836_0.624\|GO:0023052_0.624\|GO:0045202_0.615\|GO:0007267_0.564\|GO:0098660_0.556\|GO:0015276_0.552\|GO:0022834_0.552\|GO:0060089_0.543\|GO:0038023_0.535\|GO:0050896_0.531\|GO:0007268_0.513\|GO:0098916_0.513\|GO:0099536_0.513\|GO:0099537_0.513\|GO:0050794_0.509	IPR006028+323-343_349-370_383-404+\|IPR006029+327-424+\|IPR006201+99-430_101-492_147-163_186-197_232-246_314-326+\|IPR006202+100-319+\|IPR018000+232-246+\|IPR036719+321-456+\|IPR036734+86-317_100-319+\|IPR038050+318-487+	—	PF02931+100-319+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+327-424+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:1.20.58.390:FF:000067+318-436+Glycine_receptor_subunit_alpha-2\|G3DSA:2.70.170.10:FF:000021+96-317+Gamma-aminobutyric_acid_receptor_isoform_3b	PTHR18945+101-492+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	640-716	1.000	1-639	7pc0_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.723	81986.230	4.643	-27.000	28.073	11.732	50.698	49.302	12.570	15.503	47.207

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	green	3718.097	2331.972	2502.398	3635.981	3434.839	2215.017	2458.155	2047.924	6343.073	4524.513	5303.896

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.128	0.504	0.648	-0.115	-0.618	—	—	0.406	—	—	—	—	—

No JSON data available for plots.

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