Hg_chrom9_TN10mRNA_16852
Organism: Heterodera glycines Gene Locus: chr9:1978736-1981548 Feature type: polypeptideProtein Sequence
Length: 580
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 1.243 | 0.721 | 1.011 | 0.977 | 2.166 | 0.698 | 1.379 | 0.92 | 1.212 | 0.888 | 1.217 | 0.718 | 1.16 | 1.513 | 0.911 | 0.82 | 1.019 | 0.663 | 0.609 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15925
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRS,KRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.675
|
0.167
|
0.019
|
0.603
|
0.049
|
0.091
|
0.056
|
0.013
|
0.111
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004895
|
2.000
|
1.000
|
Hsc_gene_423.t1
|
Hsc_gene_423.t1
|
— |
P40809.1 GTPase-activating protein RacGAP84C [Drosophila melanogaster]
|
KAF7634995.1 Rac GTPase-activating protein 1 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007165
|
GO:0008150_0.907|GO:0009987_0.844|GO:0065007_0.839|GO:0005575_0.810|GO:0050789_0.805|GO:0110165_0.800|GO:0050794_0.746|GO:0005622_0.714|GO:0050896_0.659|GO:0003674_0.641|GO:0023052_0.615|GO:0007154_0.611|GO:0051716_0.605|GO:0005488_0.591|GO:0007165_0.562|GO:0016020_0.555|GO:0005515_0.552
|
IPR000198+340-533_351-530_356-493+|IPR002219+274-324_275-324_290-325+|IPR008936+348-543_352-534+|IPR046349+274-324+
|
SM00109+275-324+|SM00324+351-530+
|
PF00130+290-325+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF00620+356-493+RhoGAP_domain
|
— |
PTHR46199+42-537+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;110-257;544-580
|
2.000
|
3-109;258-543
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
65294.490
|
9.455
|
28.000
|
25.862
|
8.276
|
51.034
|
48.966
|
16.034
|
9.828
|
48.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
735.695
|
643.907
|
378.497
|
582.939
|
638.605
|
1030.754
|
2783.098
|
899.249
|
481.686
|
248.509
|
348.442
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.996
|
-0.280
|
0.732
|
— |
0.705
|
1.444
|
— |
1.776
|
— | — | — | — | — |
No JSON data available for plots.