SCN Proteipedia

Hg_chrom9_TN10mRNA_16862

Organism: Heterodera glycines Gene Locus: chr9:2029364-2068940 Feature type: polypeptide

Protein Sequence

Length: 2,440

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.148	0.905	0.849	0.523	0.963	1.492	0.864	1.209	1.102	1.152	0.739	0.796	0.478	1.111	1.347	1.557	0.867	1.068	0.504	0.313	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15934	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRQK,RRRR,RRKKHRPP,RRKASKEESDKVRRA,RKHPSEFEFPSQRERKS,KKDEGQQWGMGIGKRPRG,KRATTLSAPADPRTDQRRK	—	—	—	—	—	—	0.000	—	—	0.220	0.148	0.041	0.595	0.265	0.142	0.149	0.045	0.736	0.129

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002539	1.000	3.000	Hsc_gene_443.t1;Hsc_gene_443.t2;Hsc_gene_445.t1	Hsc_gene_439.t1;Hsc_gene_443.t1;Hsc_gene_443.t2;Hsc_gene_445.t1	—	O55164.1 Multiple PDZ domain protein [Rattus norvegicus]	KAI1727009.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.935\|GO:0110165_0.879\|GO:0016020_0.749\|GO:0008150_0.710\|GO:0005622_0.692\|GO:0009987_0.657\|GO:0071944_0.595\|GO:0005886_0.559\|GO:0043226_0.509\|GO:0005737_0.506\|GO:0030054_0.504	IPR001478+269-348_271-351_275-347_279-351_538-624_539-620_539-621_547-624_698-764_709-790_711-795_898-985_900-975_903-974_908-988_1134-1211_1138-1211_1146-1211_1148-1226_1486-1611_1488-1614_1497-1614_1548-1611_1694-1787_1703-1802_1746-1799_1957-2038_1959-2042_1961-2038_1967-2042_2059-2141_2060-2137_2061-2137_2068-2141_2355-2427_2355-2431_2356-2427_2364-2431+\|IPR036034+258-359_265-354_529-622_533-630_694-799_694-801_880-990_885-989_1133-1211_1134-1226_1472-1619_1480-1613_1677-1816_1742-1805_1937-2049_1941-2048_2049-2140_2055-2155_2340-2434_2350-2432+\|IPR051342+1030-1318+	SM00228+279-351_547-624_711-795_908-988_1148-1226_1497-1614_1703-1802_1967-2042_2068-2141_2364-2431+	PF00595+275-347_539-620_903-974_1146-1211_1548-1611_1961-2038_2061-2137_2356-2427+PDZ_domain	G3DSA:2.30.42.10:FF:000038+1942-2050+Multiple_PDZ_domain_protein_isoform_X1\|G3DSA:2.30.42.10:FF:000070+884-989+Multiple_PDZ_domain_protein	PTHR19964+1030-1318+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-56;184-236;378-517;1363-1541;1624-1753;1804-1957;2139-2339	7.000	57-183;237-377;518-1362;1542-1623;1754-1803;1958-2138;2340-2440	6ird_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.889	261824.190	8.692	54.500	24.344	5.861	50.246	49.754	13.893	10.451	56.230

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	4204.955	4531.986	4020.202	1919.614	1210.614	1782.248	1307.665	3273.853	1543.395	10471.814	6645.349

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.402	-1.377	-0.958	-0.697	0.573	-0.438	0.767	-1.181	—	—	-2.594	—	—

No JSON data available for plots.

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