SCN Proteipedia

Hg_chrom9_TN10mRNA_16865

Organism: Heterodera glycines Gene Locus: chr9:2080705-2089843 Feature type: polypeptide

Protein Sequence

Length: 961

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.125	1.621	0.662	0.574	0.78	1.894	0.718	1.353	0.647	0.956	0.709	1.224	0.867	1.441	0.998	2.096	1.075	0.489	0.16	0.092	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15937	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRS,RRRRNNEAAKRCRANRR,KRCRANRRAVFEYRSRKA,RRASFSEAKAGDGQCRKRS,RKRSNEPIKRKSHEKQHRK	—	—	—	—	—	—	0.000	—	—	0.907	0.115	0.015	0.346	0.031	0.028	0.030	0.020	0.047	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004900	1.000	2.000	Hsc_gene_447.t1;Hsc_gene_447.t2	—	—	Q21361.1 Transcription factor atf-2 [Caenorhabditis elegans]	KAF7638991.1 BZIP domain-containing protein, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355	GO:0008150_0.964\|GO:0065007_0.936\|GO:0009987_0.924\|GO:0050789_0.924\|GO:0050794_0.919\|GO:0003674_0.853\|GO:0005488_0.853\|GO:0008152_0.840\|GO:0019222_0.840\|GO:0031323_0.840\|GO:0044237_0.840\|GO:0044238_0.838\|GO:0080090_0.838\|GO:0043170_0.832\|GO:0060255_0.832\|GO:0009058_0.825\|GO:0009059_0.825\|GO:0010467_0.825\|GO:0044249_0.825\|GO:0048518_0.823\|GO:0048522_0.820\|GO:0009889_0.817\|GO:0010468_0.817\|GO:0010556_0.817\|GO:0031326_0.817\|GO:0006139_0.814\|GO:0016070_0.814\|GO:0032774_0.814\|GO:0034654_0.814\|GO:0090304_0.814\|GO:0141187_0.814\|GO:0019219_0.803\|GO:0051252_0.803\|GO:0048519_0.792\|GO:0005515_0.790\|GO:0003676_0.789\|GO:0006351_0.789\|GO:0097159_0.789\|GO:2001141_0.788\|GO:0009893_0.785\|GO:0006355_0.784\|GO:0010604_0.780\|GO:0031325_0.779\|GO:0009891_0.769\|GO:0048523_0.769\|GO:0031328_0.768\|GO:0006366_0.760\|GO:0010557_0.760\|GO:0045935_0.756\|GO:0051254_0.754\|GO:0006357_0.752\|GO:0003677_0.741\|GO:0045893_0.740\|GO:1902680_0.740\|GO:0043565_0.737\|GO:0003690_0.727\|GO:0009892_0.726\|GO:1990837_0.726\|GO:0031324_0.724\|GO:0010605_0.721\|GO:0045944_0.720\|GO:0000976_0.714\|GO:0001067_0.714\|GO:0009890_0.712\|GO:0010558_0.712\|GO:0031327_0.712\|GO:0045892_0.712\|GO:0045934_0.712\|GO:0051253_0.712\|GO:1902679_0.712\|GO:0000122_0.697\|GO:0000977_0.691\|GO:0046983_0.656\|GO:0046982_0.650	IPR004827+887-951_889-952_890-941+\|IPR046347+889-949+	SM00338+887-951+	PF07716+890-941+Basic_region_leucine_zipper	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-961	0.000	—	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.975	102319.990	8.792	25.000	20.604	6.348	56.191	43.809	12.279	8.325	59.938

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	lightgreen	349.637	383.647	65.075	77.192	769.066	882.216	199.768	116.671	218.692	430.532	339.743

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.791	-2.451	0.356	3.286	0.213	-2.134	-3.032	0.919	—	—	—	—	—

No JSON data available for plots.

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