Hg_chrom9_TN10mRNA_16868
Organism: Heterodera glycines Gene Locus: chr9:2096068-2101545 Feature type: polypeptideProtein Sequence
Length: 448
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.661 | 0.623 | 0.893 | 0.847 | 0.595 | 0.973 | 0.239 | 1.116 | 0.546 | 0.875 | 0.338 | 0.657 | 0.31 | 3.177 | 2.915 | 1.148 | 1.317 | 0.304 | 1.374 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15939
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
FKRR,RRTPIRTPWPARTARRERT,PWPARTARRERTARPAWKPRPARIPWRRRKPRPTRQPRRQRRARTAR
|
47-71
|
0.927
|
68-88
|
0.993
|
— | — |
0.000
|
— | — |
0.185
|
0.231
|
0.005
|
0.330
|
0.071
|
0.045
|
0.242
|
0.024
|
0.437
|
0.347
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001451
|
4.000
|
1.000
|
Hsc_gene_5312.t1
|
— | — | — | — |
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-46;88-448
|
1.000
|
47-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
49270.820
|
11.972
|
41.000
|
27.232
|
5.134
|
49.777
|
50.223
|
18.750
|
8.482
|
60.938
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
47665.496
|
51.689
|
20.202
|
162.735
|
93545.095
|
224323.206
|
62958.098
|
3283.063
|
16.868
|
64394.863
|
36804.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.587
|
1.518
|
3.123
|
9.135
|
1.276
|
-1.824
|
-6.215
|
4.410
|
-12.050
|
3.462
|
1.387
|
— | — |
No JSON data available for plots.