Hg_chrom9_TN10mRNA_16869
Organism: Heterodera glycines Gene Locus: chr9:2096068-2101545 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.691 | 0.581 | 0.868 | 0.862 | 0.606 | 0.991 | 0.244 | 1.136 | 0.505 | 0.891 | 0.344 | 0.668 | 0.316 | 3.191 | 2.876 | 1.169 | 1.304 | 0.31 | 1.224 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15939
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
FKRR,RTARRERTARPAWKPRPARIPWRRRKPRPTRQPRRQRRARTAR
|
47-71
|
0.927
|
68-88
|
0.993
|
— | — |
0.000
|
— | — |
0.181
|
0.235
|
0.005
|
0.325
|
0.077
|
0.048
|
0.258
|
0.025
|
0.432
|
0.357
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001451
|
4.000
|
1.000
|
Hsc_gene_5312.t1
|
— | — | — | — |
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-46;88-440
|
1.000
|
47-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
48231.660
|
11.951
|
40.000
|
27.045
|
5.000
|
49.545
|
50.455
|
18.636
|
8.409
|
61.136
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
47665.496
|
51.689
|
20.202
|
162.735
|
93545.095
|
224323.206
|
62958.098
|
3283.063
|
16.868
|
64394.863
|
36804.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.587
|
1.518
|
3.123
|
9.135
|
1.276
|
-1.824
|
-6.215
|
4.410
|
-12.050
|
3.462
|
1.387
|
— | — |
No JSON data available for plots.