Hg_chrom9_TN10mRNA_16873
Organism: Heterodera glycines Gene Locus: chr9:2112950-2116787 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.896 | 1.425 | 0.755 | 0.75 | 1.285 | 0.76 | 0.471 | 1.581 | 0.615 | 1.656 | 0.988 | 0.93 | 1.757 | 0.684 | 1.21 | 1.186 | 1.069 | 0.629 | 1.52 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15943
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.518
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KRKL,KSKKRNANKRK,KRKFDYLISTRKKVT,KKRNANKRKFDYLISTRKK,KRNANKRKFDYLISTRKKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.357
|
0.266
|
0.027
|
0.421
|
0.510
|
0.294
|
0.203
|
0.092
|
0.150
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012538
|
1.000
|
1.000
|
Hsc_gene_462.t1
|
Hsc_gene_461.t1;Hsc_gene_461.t2;Hsc_gene_462.t1
|
— |
Q9VAG4.1 Vacuolar protein sorting-associated protein 16B [Drosophila melanogaster]
|
KAI1713721.1 dnaJ domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.966|GO:0005575_0.833|GO:0110165_0.833|GO:0009987_0.792|GO:0051179_0.682|GO:0016020_0.677|GO:0006810_0.659|GO:0051234_0.659|GO:0005622_0.649|GO:0043226_0.509|GO:0043229_0.501
|
IPR040057+52-334+
|
— | — | — |
PTHR13364+52-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-159;503-506
|
1.000
|
160-502
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
57926.840
|
7.993
|
11.000
|
27.470
|
13.636
|
51.383
|
48.617
|
15.613
|
11.858
|
46.640
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2445.559
|
678.581
|
638.098
|
448.574
|
411.067
|
447.974
|
986.430
|
494.345
|
290.859
|
8941.774
|
5234.239
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.318
|
-0.734
|
-0.400
|
-0.157
|
— |
1.150
|
— |
1.141
|
— | — | — | — | — |
No JSON data available for plots.