Hg_chrom9_TN10mRNA_16877
Organism: Heterodera glycines Gene Locus: chr9:2120509-2123211 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.129 | 0.602 | 0.706 | 0.558 | 0.863 | 0.996 | 0.616 | 0.809 | 0.647 | 1.05 | 0.834 | 2.094 | 1.618 | 0.996 | 1.783 | 1.294 | 1.008 | 1.177 | 1.245 | 0.666 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15947
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.524
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— |
RRGQLSDSDVKFLEKMRDK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.167
|
0.843
|
0.201
|
0.106
|
0.101
|
0.115
|
0.100
|
0.114
|
0.111
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004903
|
2.000
|
1.000
|
Hsc_gene_465.t1
|
Hsc_gene_465.t1;Hsc_gene_466.t1;Hsc_gene_466.t2
|
— |
C5P447.1 Respiratory supercomplex factor 1, mitochondrial [Coccidioides posadasii C735 delta SOWgp]
|
KAI3413351.1 hypothetical protein GPALN_010847 [Globodera pallida]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.935|GO:0009987_0.885|GO:0005575_0.635|GO:0110165_0.631|GO:0016020_0.587|GO:0065007_0.511|GO:0005622_0.510|GO:0043226_0.506|GO:0050789_0.502
|
IPR007667+221-309_249-298+|IPR050355+240-305+
|
— |
PF04588+249-298+Hypoxia_induced_protein_conserved_region
|
— |
PTHR12297+240-305+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
187-230
|
2.000
|
1-186;231-309
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
34750.030
|
10.428
|
18.500
|
24.919
|
11.327
|
46.602
|
53.398
|
15.858
|
9.061
|
51.133
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkmagenta
|
2638.298
|
223.911
|
474.764
|
557.673
|
641.778
|
695.864
|
731.102
|
602.966
|
2858.305
|
7925.804
|
5754.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
1.179
|
0.340
|
0.171
|
— | — |
-0.312
|
0.421
|
— |
-2.218
|
-2.070
|
— | — |
No JSON data available for plots.