Hg_chrom9_TN10mRNA_16878
Organism: Heterodera glycines Gene Locus: chr9:2121765-2123481 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.276 | 0.567 | 0.554 | 0.421 | 0.813 | 1.094 | 0.581 | 1.22 | 0.407 | 1.071 | 0.831 | 1.793 | 1.355 | 0.704 | 1.493 | 1.481 | 1.299 | 1.478 | 0.938 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15947
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.524
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
8-29
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.080
|
0.918
|
0.160
|
0.103
|
0.025
|
0.095
|
0.087
|
0.068
|
0.145
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012541
|
1.000
|
1.000
|
Hsc_gene_466.t2
|
Hsc_gene_466.t1;Hsc_gene_466.t2
|
— |
C5P447.1 Respiratory supercomplex factor 1, mitochondrial [Coccidioides posadasii C735 delta SOWgp]
|
KAI3413351.1 hypothetical protein GPALN_010847 [Globodera pallida]
|
No
|
0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.921|GO:0009987_0.873|GO:0005575_0.634|GO:0110165_0.629|GO:0016020_0.582|GO:0005622_0.522|GO:0043226_0.509
|
IPR007667+76-164_104-153+|IPR050355+95-160+
|
— |
PF04588+104-153+Hypoxia_induced_protein_conserved_region
|
— |
PTHR12297+95-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
18130.780
|
10.354
|
10.000
|
23.171
|
10.976
|
48.171
|
51.829
|
15.244
|
7.927
|
54.268
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkmagenta
|
2638.298
|
223.911
|
474.764
|
557.673
|
641.778
|
695.864
|
731.102
|
602.966
|
2858.305
|
7925.804
|
5754.019
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
1.179
|
0.340
|
0.171
|
— | — |
-0.312
|
0.421
|
— |
-2.218
|
-2.070
|
— | — |
No JSON data available for plots.