Hg_chrom9_TN10mRNA_16884
Organism: Heterodera glycines Gene Locus: chr9:2155021-2156541 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.983 | 1.157 | 1.266 | 0.343 | 1.244 | 1.658 | 0.592 | 0.0 | 0.995 | 0.74 | 0.754 | 1.171 | 1.106 | 2.392 | 0.914 | 1.066 | 0.734 | 1.055 | 1.148 | 0.439 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15953
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.880
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRPRPVQKTSERKKGD,ARGRRPRPVQKTSERKKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.204
|
0.134
|
0.024
|
0.823
|
0.104
|
0.196
|
0.355
|
0.018
|
0.380
|
0.361
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002408
|
3.000
|
1.000
|
Hsc_gene_467.t1
|
Hsc_gene_467.t1
|
— |
Q6GM14.1 Drebrin-like protein B [Xenopus laevis]
|
KAI1728628.1 variant SH3 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.889|GO:0110165_0.881|GO:0008150_0.823|GO:0005622_0.815|GO:0003674_0.756|GO:0009987_0.736|GO:0016020_0.710|GO:0005737_0.693|GO:0005488_0.651|GO:0043226_0.637|GO:0043229_0.628|GO:0071944_0.589|GO:0065007_0.579|GO:0005515_0.565|GO:0050789_0.549|GO:0050794_0.533|GO:0005886_0.516
|
IPR001452+142-201_145-155_145-201_149-198_159-174_176-185_188-200+|IPR035717+146-199+|IPR036028+144-200+
|
SM00326+145-201+
|
PF14604+149-198+Variant_SH3_domain
|
G3DSA:2.30.30.40:FF:000046+142-200+Drebrin-like_protein_isoform_B
|
PTHR10829+15-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-201
|
0.000
|
— |
8p94_I
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
22090.720
|
4.297
|
-10.000
|
23.881
|
6.965
|
47.264
|
52.736
|
9.453
|
14.428
|
57.711
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
68.333
|
10.189
|
37.748
|
34.615
|
18.545
|
9.287
|
79.627
|
274.340
|
10.716
|
116.788
|
71.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.661
|
1.628
|
— |
-0.934
|
-0.982
|
3.113
|
4.787
|
-1.643
|
— | — | — | — | — |
No JSON data available for plots.