Hg_chrom9_TN10mRNA_16885
Organism: Heterodera glycines Gene Locus: chr9:2156785-2161913 Feature type: polypeptideProtein Sequence
Length: 566
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.192 | 1.192 | 0.707 | 0.487 | 1.148 | 1.133 | 0.589 | 1.502 | 0.824 | 1.051 | 0.776 | 1.247 | 1.08 | 1.121 | 1.623 | 1.54 | 0.753 | 0.803 | 0.951 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15954
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.567
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KTEEG,KRTAFGNNFEVRIKRS,SRRRPETRSIAKKLAKNVRSIGTAARRRHMRRQ
|
42-86
|
0.953
|
29-86
|
0.981
|
— | — |
0.000
|
— | — |
0.875
|
0.092
|
0.071
|
0.195
|
0.021
|
0.025
|
0.022
|
0.035
|
0.094
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012542
|
1.000
|
1.000
|
Hsc_gene_468.t1
|
— | — | — |
KAI3413344.1 hypothetical protein GPALN_010840 [Globodera pallida]
|
WP_303700209
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-319
|
1.000
|
320-566
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
62941.910
|
9.645
|
21.500
|
26.855
|
9.894
|
51.767
|
48.233
|
16.078
|
10.777
|
52.120
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
289.325
|
122.589
|
197.192
|
305.903
|
242.016
|
185.794
|
666.118
|
96.157
|
1.205
|
583.979
|
334.219
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.456
|
1.182
|
0.742
|
-0.370
|
-0.366
|
1.852
|
-1.056
|
2.935
|
-8.974
|
8.134
|
— | — | — |
No JSON data available for plots.