SCN Proteipedia

Hg_chrom9_TN10mRNA_16890

Organism: Heterodera glycines Gene Locus: chr9:2178444-2188426 Feature type: polypeptide

Protein Sequence

Length: 1,083

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.934	1.052	0.839	0.828	0.862	0.994	0.923	0.785	1.498	1.522	0.741	1.955	1.231	0.71	0.923	0.95	0.878	1.049	0.923	0.896	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_15959	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Male	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRRR,RRFSTAQQINPDTLKVIKR	—	—	—	—	—	—	0.000	—	—	0.085	0.126	0.020	0.274	0.163	0.581	0.271	0.003	0.650	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012545	1.000	1.000	Hsc_gene_475.t2	Hsc_gene_475.t1;Hsc_gene_475.t2	—	Q09573.2 Potassium/chloride cotransporter 3 [Caenorhabditis elegans]	KAF7638984.1 putative Na-K-Cl cotransporter [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006811\|GO:0015377\|GO:0016020\|GO:0022857\|GO:0055085	GO:0008150_0.971\|GO:0009987_0.895\|GO:0005575_0.833\|GO:0006810_0.811\|GO:0051179_0.811\|GO:0051234_0.811\|GO:0110165_0.795\|GO:0003674_0.784\|GO:0016020_0.761\|GO:0071944_0.739\|GO:0055085_0.724\|GO:0005886_0.723\|GO:0006811_0.707\|GO:0005215_0.682\|GO:0022857_0.682\|GO:0034220_0.668\|GO:0098660_0.636\|GO:0015075_0.633\|GO:0006812_0.620\|GO:0098655_0.615\|GO:0008324_0.611\|GO:0015318_0.604\|GO:0030001_0.595\|GO:0098662_0.583\|GO:0022890_0.556\|GO:0046873_0.554\|GO:0006820_0.550\|GO:0015698_0.549\|GO:0098656_0.545\|GO:0098661_0.545\|GO:0006821_0.543\|GO:1902476_0.538\|GO:0022804_0.521\|GO:0008509_0.516\|GO:0015103_0.515\|GO:0015291_0.514\|GO:0022853_0.513\|GO:0015293_0.510\|GO:0015108_0.509\|GO:0015294_0.509	IPR004841+113-291_400-678+\|IPR004842+77-1081+\|IPR018491+805-902_983-1081+	—	PF00324+113-291_400-678+Amino_acid_permease\|PF03522+805-902_983-1081+Solute_carrier_family_12	—	PTHR11827+77-1081+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-17;917-992	2.000	18-916;993-1083	6vwa_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.686	119523.540	6.911	4.500	20.776	10.249	41.182	58.818	10.988	9.788	49.954

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	saddlebrown	1406.565	615.014	1219.981	996.790	630.494	921.445	543.132	7499.865	135.627	1391.983	853.545

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.761	0.559	-0.184	-0.692	0.561	-0.752	2.928	-3.647	-3.446	—	—	—	—

No JSON data available for plots.

Back to Browser