Hg_chrom9_TN10mRNA_16891
Organism: Heterodera glycines Gene Locus: chr9:2188767-2194360 Feature type: polypeptideProtein Sequence
Length: 665
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.892 | 1.154 | 0.957 | 0.363 | 1.178 | 1.08 | 0.913 | 1.579 | 0.668 | 1.118 | 1.025 | 0.885 | 1.713 | 1.359 | 0.921 | 1.053 | 0.961 | 0.775 | 0.694 | 0.708 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KKKPGLPGRPKNETKTSPRRPQSKPHTPKK
|
— | — | — | — |
1-22
|
0.996
|
1.000
|
0.000
|
0.000
|
0.182
|
0.250
|
0.049
|
0.202
|
0.115
|
0.053
|
0.113
|
0.109
|
0.282
|
0.950
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001452
|
3.000
|
2.000
|
Hsc_gene_476.t1;Hsc_gene_476.t2
|
Hsc_gene_476.t1
|
— |
Q10835.1 Collagenase 3 [Xenopus laevis]
|
AAR11445.1 matrix metalloproteinase [Heterodera glycines];AAR11446.1 matrix metalloproteinase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.815|GO:0005575_0.732|GO:0110165_0.730|GO:0003674_0.689|GO:0009987_0.643|GO:0008152_0.505
|
IPR001818+129-297+|IPR006026+125-299+|IPR018487+447-490_540-584+|IPR021190+11-344_155-170_249-274_285-298_370-635+|IPR024079+53-299+|IPR036365+83-117+|IPR036375+437-632_441-629+
|
SM00120+447-490_540-584+|SM00235+125-299+
|
PF00413+129-297+Matrixin
|
— |
PTHR10201+75-569+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;361-445;640-665
|
2.000
|
80-360;446-639
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
73763.830
|
6.786
|
3.500
|
26.767
|
12.632
|
49.173
|
50.827
|
14.436
|
12.331
|
52.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
4493.718
|
1405.777
|
9770.613
|
2814.541
|
6425.488
|
4764.654
|
2065.758
|
17530.262
|
424.073
|
2550.552
|
1639.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.570
|
0.864
|
-1.689
|
1.159
|
-0.415
|
-1.197
|
1.792
|
-2.951
|
-2.697
|
2.902
|
1.593
|
— | — |