Hg_chrom9_TN10mRNA_16892
Organism: Heterodera glycines Gene Locus: chr9:2188767-2194360 Feature type: polypeptideProtein Sequence
Length: 659
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.9 | 1.2 | 0.966 | 0.366 | 1.214 | 1.051 | 0.939 | 1.745 | 0.674 | 1.169 | 0.966 | 0.893 | 1.77 | 1.167 | 0.867 | 1.041 | 0.92 | 0.805 | 0.7 | 0.759 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.996
|
1.000
|
0.000
|
0.000
|
0.187
|
0.275
|
0.053
|
0.196
|
0.116
|
0.072
|
0.126
|
0.098
|
0.321
|
0.945
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001452
|
3.000
|
2.000
|
Hsc_gene_476.t1;Hsc_gene_476.t2
|
Hsc_gene_476.t1
|
— |
Q10835.1 Collagenase 3 [Xenopus laevis]
|
AAR11445.1 matrix metalloproteinase [Heterodera glycines];AAR11446.1 matrix metalloproteinase [Heterodera glycines]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.786|GO:0005575_0.720|GO:0110165_0.718|GO:0003674_0.698|GO:0009987_0.612|GO:0003824_0.512|GO:0065007_0.503
|
IPR001818+150-318+|IPR006026+146-320+|IPR018487+441-484_534-578+|IPR021190+47-629_176-191_270-295_306-319+|IPR024079+72-320+|IPR036365+81-138+|IPR036375+431-626_435-623+
|
SM00120+441-484_534-578+|SM00235+146-320+
|
PF00413+150-318+Matrixin
|
— |
PTHR10201+14-563+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-90;392-438;634-659
|
2.000
|
91-391;439-633
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
73180.050
|
6.402
|
-1.500
|
26.707
|
13.354
|
48.862
|
51.138
|
14.112
|
12.595
|
51.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
4493.718
|
1405.777
|
9770.613
|
2814.541
|
6425.488
|
4764.654
|
2065.758
|
17530.262
|
424.073
|
2550.552
|
1639.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.570
|
0.864
|
-1.689
|
1.159
|
-0.415
|
-1.197
|
1.792
|
-2.951
|
-2.697
|
2.902
|
1.593
|
— | — |