Hg_chrom9_TN10mRNA_16893
Organism: Heterodera glycines Gene Locus: chr9:2188767-2194360 Feature type: polypeptideProtein Sequence
Length: 567
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 0.984 | 0.962 | 0.243 | 1.382 | 1.221 | 0.903 | 1.764 | 0.745 | 1.168 | 0.909 | 0.934 | 1.862 | 1.255 | 0.9 | 0.983 | 0.983 | 0.775 | 0.814 | 0.778 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.996
|
1.000
|
0.000
|
0.000
|
0.241
|
0.182
|
0.063
|
0.184
|
0.146
|
0.083
|
0.081
|
0.081
|
0.285
|
0.961
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001452
|
3.000
|
2.000
|
Hsc_gene_476.t1;Hsc_gene_476.t2
|
Hsc_gene_476.t2
|
— |
Q10835.1 Collagenase 3 [Xenopus laevis]
|
AAR11445.1 matrix metalloproteinase [Heterodera glycines];AAR11446.1 matrix metalloproteinase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.892|GO:0009987_0.750|GO:0005575_0.741|GO:0110165_0.739|GO:0003674_0.659|GO:0008152_0.579|GO:0065007_0.564|GO:0050789_0.544|GO:0050896_0.528|GO:0043170_0.520|GO:0044238_0.516
|
IPR001818+129-297+|IPR006026+125-299+|IPR018487+349-392_442-486+|IPR021190+11-537_155-170_249-274_285-298+|IPR024079+53-301+|IPR036365+83-117+|IPR036375+339-534_343-531+
|
SM00120+349-392_442-486+|SM00235+125-299+
|
PF00413+129-297+Matrixin
|
— |
PTHR10201+75-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;298-347;542-567
|
2.000
|
80-297;348-541
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
63644.320
|
5.794
|
-8.000
|
27.513
|
13.933
|
49.383
|
50.617
|
13.933
|
13.580
|
49.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
4493.718
|
1405.777
|
9770.613
|
2814.541
|
6425.488
|
4764.654
|
2065.758
|
17530.262
|
424.073
|
2550.552
|
1639.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.570
|
0.864
|
-1.689
|
1.159
|
-0.415
|
-1.197
|
1.792
|
-2.951
|
-2.697
|
2.902
|
1.593
|
— | — |