Hg_chrom9_TN10mRNA_16894
Organism: Heterodera glycines Gene Locus: chr9:2203832-2209176 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.036 | 0.565 | 0.368 | 0.489 | 0.574 | 1.038 | 0.675 | 0.709 | 1.35 | 1.696 | 0.705 | 1.786 | 1.518 | 0.623 | 1.115 | 0.983 | 1.128 | 1.227 | 2.336 | 1.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15961
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.075
|
0.133
|
0.037
|
0.102
|
0.441
|
0.474
|
0.340
|
0.108
|
0.720
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012546
|
1.000
|
1.000
|
Hsc_gene_477.t1
|
Hsc_gene_477.t1
|
— |
Q22931.3 Folate-like transporter 3 [Caenorhabditis elegans]
|
KAI1728633.1 reduced folate carrier domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0051180|GO:0090482
|
GO:0008150_0.953|GO:0009987_0.904|GO:0006810_0.838|GO:0051179_0.838|GO:0051234_0.838|GO:0005575_0.833|GO:0110165_0.828|GO:0016020_0.791|GO:0071944_0.778|GO:0005886_0.774|GO:0003674_0.769|GO:0071705_0.724|GO:0055085_0.707|GO:0051180_0.670|GO:0005215_0.667|GO:0022857_0.667|GO:0008152_0.574|GO:0035461_0.569|GO:0044237_0.555|GO:0090482_0.552|GO:0044281_0.527
|
IPR002666+17-488_30-484_37-435+|IPR036259+35-465_49-468+
|
— |
PF01770+37-435+Reduced_folate_carrier
|
— |
PTHR10686+30-484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-494
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
56173.170
|
10.022
|
26.500
|
17.004
|
15.182
|
37.247
|
62.753
|
11.538
|
5.466
|
45.547
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
red
|
581.624
|
109.327
|
228.265
|
377.713
|
677.034
|
532.738
|
1147.561
|
2891.538
|
11.057
|
299.745
|
176.022
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
1.651
|
0.837
|
0.810
|
-0.332
|
1.118
|
2.326
|
-1.186
|
-4.885
|
5.302
|
— | — | — |
No JSON data available for plots.