Hg_chrom9_TN10mRNA_16898
Organism: Heterodera glycines Gene Locus: chr9:2222166-2229826 Feature type: polypeptideProtein Sequence
Length: 1,269
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 0.843 | 0.96 | 0.489 | 1.064 | 1.03 | 0.948 | 1.103 | 1.261 | 1.044 | 0.991 | 0.695 | 1.51 | 0.97 | 0.965 | 1.092 | 1.111 | 1.373 | 0.424 | 0.556 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15965
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KRRK,RRRKAKKQ,KKHYAIEIGRSEAKKLKI
|
— | — | — | — |
1-22
|
0.993
|
1.000
|
0.000
|
0.000
|
0.424
|
0.115
|
0.043
|
0.230
|
0.703
|
0.117
|
0.459
|
0.152
|
0.220
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012547
|
1.000
|
1.000
|
Hsc_gene_480.t1
|
Hsc_gene_480.t1
|
— |
H2KYE0.1 Nicotinic receptor-associated protein 4 [Caenorhabditis elegans]
|
KAI1721399.1 nodal modulator 3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.947|GO:0005575_0.922|GO:0110165_0.916|GO:0009987_0.897|GO:0005622_0.812|GO:0005737_0.761|GO:0071840_0.747|GO:0016043_0.736|GO:0016020_0.714|GO:0003674_0.687|GO:0005488_0.580|GO:0051179_0.558|GO:0051234_0.548|GO:0071944_0.529|GO:0043226_0.528
|
IPR051417+23-1234+
|
— |
PF22898+29-108+BOS_complex_subunit_NOMO1-like,_first_beta_sandwich_domain|PF22902+821-888+BOS_complex_subunit_NOMO1-like,_beta_sandwich_domain
|
— |
PTHR23303+23-1234+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1269
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
138960.230
|
7.079
|
9.000
|
25.138
|
10.087
|
47.203
|
52.797
|
13.475
|
11.663
|
53.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkgrey
|
2212.855
|
1651.093
|
1494.842
|
1600.833
|
2000.056
|
2157.126
|
2735.772
|
1963.700
|
1601.771
|
3378.628
|
2617.118
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.373
|
-0.182
|
0.207
|
0.290
|
— |
0.353
|
— |
0.621
|
— | — | — | — | — |