Hg_chrom9_TN10mRNA_16906
Organism: Heterodera glycines Gene Locus: chr9:2254305-2261059 Feature type: polypeptideProtein Sequence
Length: 502
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.158 | 0.834 | 0.978 | 0.618 | 1.162 | 0.919 | 0.64 | 2.59 | 1.328 | 1.454 | 0.755 | 1.289 | 1.494 | 0.843 | 1.626 | 0.598 | 0.425 | 0.936 | 1.686 | 0.41 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15972
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.434
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
40-60
|
0.981
|
— | — | — | — |
0.010
|
— | — |
0.074
|
0.687
|
0.059
|
0.385
|
0.426
|
0.105
|
0.176
|
0.064
|
0.160
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012551
|
1.000
|
1.000
|
Hsc_gene_496.t1
|
Hsc_gene_497.t1
|
— |
P29981.1 Cytochrome P450 4C1 [Blaberus discoidalis]
|
KAI1720386.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.887|GO:0003674_0.776|GO:0009987_0.765|GO:0008152_0.763|GO:0003824_0.704|GO:0044237_0.679|GO:0044238_0.631|GO:0044281_0.624|GO:0005575_0.617|GO:0110165_0.614|GO:0006082_0.588|GO:0019752_0.588|GO:0043436_0.588|GO:0016491_0.556|GO:0005622_0.544|GO:0016020_0.542|GO:0006629_0.537|GO:0044255_0.528|GO:0004497_0.527
|
IPR001128+85-475_310-327_365-376_440-449_449-460+|IPR002403+360-376_393-407_409-427_433-449_449-467+|IPR017972+442-451+|IPR036396+4-502_12-500+|IPR050196+11-500+
|
— |
PF00067+85-475+Cytochrome_P450
|
— |
PTHR24291+11-500+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-502
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
57510.320
|
8.125
|
16.000
|
30.478
|
14.143
|
44.422
|
55.578
|
18.127
|
12.351
|
43.426
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
65.336
|
66.511
|
57.180
|
92.136
|
106.615
|
9.763
|
18.857
|
9.364
|
5.529
|
146.537
|
86.105
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.447
|
0.334
|
0.796
|
— |
-3.434
|
0.955
|
— |
1.151
|
-4.884
|
— | — | — | — |
No JSON data available for plots.