Hg_chrom9_TN10mRNA_16907
Organism: Heterodera glycines Gene Locus: chr9:2261422-2269526 Feature type: polypeptideProtein Sequence
Length: 1,381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.791 | 1.132 | 0.3 | 2.752 | 1.801 | 0.75 | 1.34 | 0.837 | 0.822 | 0.976 | 1.15 | 0.624 | 0.975 | 1.419 | 0.983 | 0.605 | 0.549 | 0.724 | 0.277 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15973
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.874
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRR,RKRK,RRKR,RRRK,KKKEGEKRWERGKER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.458
|
0.086
|
0.009
|
0.661
|
0.049
|
0.123
|
0.138
|
0.016
|
0.239
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004904
|
1.000
|
2.000
|
Hsc_gene_495.t1;Hsc_gene_495.t2
|
— | — | — |
KAF7638971.1 FHA domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR000253+23-65+|IPR008984+11-64+
|
— |
PF00498+23-65+FHA_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-371;583-1320
|
2.000
|
372-582;1321-1381
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.891
|
156287.560
|
4.430
|
-110.500
|
38.812
|
6.807
|
59.812
|
40.188
|
16.075
|
22.737
|
44.461
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
472.030
|
477.342
|
568.007
|
187.095
|
84.025
|
106.638
|
55.234
|
322.785
|
159.147
|
1270.347
|
794.119
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.488
|
-1.492
|
-1.185
|
0.357
|
-0.938
|
1.499
|
-2.405
|
-3.115
|
— |
-3.596
|
— | — |
No JSON data available for plots.