Hg_chrom9_TN10mRNA_16910
Organism: Heterodera glycines Gene Locus: chr9:2284029-2286146 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.468 | 1.306 | 0.396 | 1.197 | 0.663 | 0.787 | 1.724 | 1.086 | 1.204 | 0.827 | 1.183 | 1.197 | 0.663 | 1.935 | 0.985 | 0.895 | 0.784 | 1.326 | 1.099 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15976
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRYISQSGRARRQRSK,RRTGKMKRLRLSHKPKKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.646
|
0.264
|
0.027
|
0.612
|
0.030
|
0.049
|
0.034
|
0.024
|
0.078
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001439
|
3.000
|
2.000
|
Hsc_gene_23260.t1;Hsc_gene_23289.t1
|
— | — |
Q54DF7.1 Probable serine/threonine-protein kinase DDB_G0292354 [Dictyostelium discoideum]
|
KAI1715266.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.845|GO:0110165_0.835|GO:0005622_0.798|GO:0008150_0.779|GO:0003674_0.712|GO:0009987_0.695|GO:0005737_0.690|GO:0043226_0.677|GO:0003824_0.668|GO:0043229_0.660|GO:0016020_0.620|GO:0016740_0.583|GO:0065007_0.563|GO:0008152_0.546|GO:0043227_0.546|GO:0140096_0.536|GO:0050789_0.533|GO:0043231_0.524|GO:0016772_0.512|GO:0050794_0.506
|
IPR000719+44-334_45-297+|IPR011009+41-346+|IPR050235+43-346+
|
SM00220+44-334+
|
PF00069+45-297+Protein_kinase_domain
|
— |
PTHR11909+43-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31
|
1.000
|
32-348
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
39853.120
|
8.158
|
8.000
|
32.759
|
13.218
|
49.713
|
50.287
|
18.391
|
14.368
|
46.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
76.780
|
1.535
|
3.725
|
26.300
|
77.208
|
205.834
|
31.479
|
202.051
|
1.028
|
129.591
|
74.493
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.965
|
2.931
|
1.522
|
1.428
|
-2.696
|
— |
-2.533
|
-6.764
|
4.580
|
— | — | — |
No JSON data available for plots.