Hg_chrom9_TN10mRNA_16912
Organism: Heterodera glycines Gene Locus: chr9:2298895-2303825 Feature type: polypeptideProtein Sequence
Length: 717
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 0.843 | 1.014 | 0.385 | 0.674 | 1.18 | 0.714 | 1.185 | 1.147 | 1.621 | 0.613 | 2.133 | 1.472 | 0.724 | 1.622 | 1.275 | 0.709 | 0.972 | 0.966 | 0.984 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15978
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.753
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion|peroxisome
|
— | — |
71-91
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.126
|
0.740
|
0.042
|
0.099
|
0.436
|
0.154
|
0.111
|
0.853
|
0.174
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002006
|
3.000
|
1.000
|
Hsc_gene_503.t1
|
Hsc_gene_503.t1
|
— |
P28288.1 ATP-binding cassette sub-family D member 3 [Homo sapiens]
|
KAF7638960.1 ABC transporter domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016020|GO:0016887|GO:0055085|GO:0140359
|
GO:0008150_0.927|GO:0005575_0.813|GO:0110165_0.800|GO:0016020_0.746|GO:0009987_0.716|GO:0005622_0.693|GO:0043226_0.650|GO:0043229_0.623|GO:0005737_0.618|GO:0043227_0.611|GO:0008152_0.597|GO:0043231_0.591|GO:0044238_0.566|GO:0003674_0.544|GO:0044237_0.534
|
IPR003439+496-715_513-655+|IPR003593+521-712+|IPR011527+80-348+|IPR017871+627-641+|IPR027417+488-713_490-698+|IPR036640+75-340+|IPR050835+54-705+
|
SM00382+521-712+
|
PF00005+513-655+ABC_transporter|PF06472+80-348+ABC_transporter_transmembrane_region_2
|
G3DSA:3.40.50.300:FF:000636+487-712+ATP-binding_cassette_sub-family_D_member_3
|
PTHR11384+54-705+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
717-717
|
1.000
|
1-716
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
81535.080
|
9.666
|
25.500
|
23.989
|
12.273
|
45.467
|
54.533
|
14.365
|
9.623
|
46.304
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
1389.804
|
1388.685
|
1323.221
|
1731.819
|
2305.932
|
2020.625
|
3339.732
|
1295.677
|
801.033
|
452.485
|
601.862
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.298
|
0.181
|
0.496
|
0.381
|
-0.176
|
0.735
|
-0.746
|
1.509
|
— | — | — | — | — |
No JSON data available for plots.