Hg_chrom9_TN10mRNA_16913
Organism: Heterodera glycines Gene Locus: chr9:2304076-2304963 Feature type: polypeptideProtein Sequence
Length: 109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 1.707 | 0.667 | 1.582 | 0.765 | 1.647 | 0.546 | 0.459 | 1.019 | 0.744 | 1.529 | 2.159 | 1.529 | 1.411 | 0.374 | 0.786 | 1.053 | 1.39 | 0.706 | 0.809 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15979
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.469
|
0.381
|
0.009
|
0.627
|
0.064
|
0.040
|
0.083
|
0.017
|
0.251
|
0.271
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004905
|
2.000
|
1.000
|
Hsc_gene_504.t1
|
Hsc_gene_504.t1
|
— | — |
XP_003142866.1 immunoglobulin I-set domain-containing protein [Loa loa];EFO21201.1 immunoglobulin I-set domain-containing protein [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.876|GO:0110165_0.867|GO:0008150_0.806|GO:0005622_0.696|GO:0003674_0.692|GO:0043226_0.690|GO:0005737_0.640|GO:0009987_0.635|GO:0043229_0.627|GO:0065007_0.572|GO:0050789_0.554|GO:0005488_0.527|GO:0032502_0.516|GO:0048856_0.516|GO:0016043_0.507|GO:0071840_0.507
|
IPR003598+16-86+|IPR007110+4-91+|IPR013098+13-91+|IPR013783+2-100+|IPR036179+2-91+
|
SM00408+16-86+
|
PF07679+13-91+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000032+1-100+palladin_isoform_X1
|
PTHR44170+4-89+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-109
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
12276.260
|
8.640
|
4.500
|
21.101
|
10.092
|
46.789
|
53.211
|
12.844
|
8.257
|
53.211
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
375.731
|
65.545
|
688.800
|
143.714
|
56.963
|
152.619
|
45.547
|
2232.830
|
263.901
|
176.142
|
213.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.163
|
0.995
|
-2.151
|
-1.371
|
1.437
|
-1.733
|
3.770
|
-5.473
|
— | — | — | — | — |
No JSON data available for plots.