Hg_chrom9_TN10mRNA_16914
Organism: Heterodera glycines Gene Locus: chr9:2304117-2304963 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 1.691 | 0.496 | 1.881 | 0.758 | 1.632 | 0.649 | 0.455 | 1.01 | 0.86 | 1.515 | 1.604 | 1.263 | 1.399 | 0.742 | 0.779 | 0.894 | 1.377 | 0.699 | 0.802 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15979
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.516
|
0.437
|
0.009
|
0.636
|
0.053
|
0.023
|
0.061
|
0.013
|
0.171
|
0.356
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004905
|
2.000
|
1.000
|
Hsc_gene_504.t1
|
Hsc_gene_504.t1
|
— | — |
XP_003142866.1 immunoglobulin I-set domain-containing protein [Loa loa];EFO21201.1 immunoglobulin I-set domain-containing protein [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.876|GO:0110165_0.866|GO:0008150_0.804|GO:0005622_0.691|GO:0003674_0.689|GO:0043226_0.679|GO:0009987_0.628|GO:0005737_0.618|GO:0043229_0.613|GO:0065007_0.573|GO:0050789_0.556|GO:0005488_0.527|GO:0032502_0.518|GO:0048856_0.518|GO:0071840_0.503|GO:0016043_0.502
|
IPR003598+16-86+|IPR007110+4-91+|IPR013098+13-91+|IPR013783+2-99+|IPR036179+2-91+
|
SM00408+16-86+
|
PF07679+13-91+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000032+1-100+palladin_isoform_X1
|
PTHR44170+4-89+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
12367.420
|
9.327
|
7.500
|
21.818
|
9.091
|
46.364
|
53.636
|
14.545
|
7.273
|
52.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
375.731
|
65.545
|
688.800
|
143.714
|
56.963
|
152.619
|
45.547
|
2232.830
|
263.901
|
176.142
|
213.753
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.163
|
0.995
|
-2.151
|
-1.371
|
1.437
|
-1.733
|
3.770
|
-5.473
|
— | — | — | — | — |
No JSON data available for plots.