Hg_chrom9_TN10mRNA_16915
Organism: Heterodera glycines Gene Locus: chr9:2305566-2306882 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.044 | 0.596 | 0.699 | 0.442 | 1.068 | 1.205 | 0.967 | 0.427 | 1.14 | 0.982 | 0.389 | 2.011 | 1.781 | 1.068 | 1.919 | 1.221 | 0.911 | 0.971 | 0.986 | 0.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15980
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.099
|
0.724
|
0.274
|
0.102
|
0.100
|
0.439
|
0.184
|
0.025
|
0.129
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012554
|
1.000
|
1.000
|
Hsc_gene_505.t2
|
Hsc_gene_22117.t1;Hsc_gene_505.t1;Hsc_gene_505.t2
|
— |
Q9NAQ9.1 Mitochondrial import inner membrane translocase subunit tim-22 [Caenorhabditis elegans]
|
KAI6196317.1 Mitochondrial import inner membrane translocase subunit TIM22 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042721|GO:0045039
|
GO:0005575_0.855|GO:0110165_0.855|GO:0016020_0.797|GO:0005622_0.651|GO:0043226_0.627|GO:0005737_0.620|GO:0043229_0.604|GO:0043227_0.585|GO:0043231_0.577|GO:0008150_0.535
|
IPR039175+99-232+
|
— |
PF02466+109-225+Tim17/Tim22/Tim23/Pmp24_family
|
— |
PTHR14110+99-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53
|
1.000
|
54-234
|
7cgp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.854
|
26005.710
|
9.164
|
5.000
|
23.077
|
10.256
|
44.444
|
55.556
|
12.821
|
10.256
|
50.855
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
535.348
|
458.298
|
387.690
|
486.172
|
592.292
|
440.038
|
838.030
|
398.960
|
432.828
|
666.971
|
566.624
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.471
|
— |
0.435
|
0.252
|
-0.414
|
0.940
|
-0.248
|
1.214
|
— | — | — | — | — |
No JSON data available for plots.