Hg_chrom9_TN10mRNA_16918
Organism: Heterodera glycines Gene Locus: chr9:2311587-2314010 Feature type: polypeptideProtein Sequence
Length: 340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 1.094 | 0.749 | 0.507 | 0.686 | 0.98 | 0.63 | 1.176 | 1.242 | 1.669 | 0.579 | 1.384 | 1.225 | 0.679 | 1.08 | 1.345 | 1.013 | 1.203 | 0.452 | 1.125 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15983
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.058
|
0.342
|
0.026
|
0.177
|
0.837
|
0.293
|
0.244
|
0.038
|
0.228
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012557
|
1.000
|
1.000
|
Hsc_gene_508.t1
|
Hsc_gene_508.t1
|
— |
Q09517.2 Very-long-chain 3-oxooacyl-coA reductase let-767 [Caenorhabditis elegans]
|
ABC59300.1 17beta-hydroxysteroid dehydrogenase, partial [Heterodera glycines]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.774|GO:0110165_0.769|GO:0008150_0.712|GO:0016020_0.655|GO:0003674_0.653|GO:0005622_0.634|GO:0005737_0.601|GO:0043226_0.552|GO:0009987_0.549|GO:0043227_0.546|GO:0043229_0.544|GO:0043231_0.529|GO:0071944_0.529|GO:0003824_0.513
|
IPR002347+58-75_58-262_141-152_192-208_198-206_218-237_241-258+|IPR020904+205-233+|IPR036291+57-284+|IPR051019+14-318+
|
— |
PF00106+58-262+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000137+54-292+Hydroxysteroid_(17-beta)_dehydrogenase_3
|
PTHR43899+14-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-340
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
37583.310
|
8.322
|
7.000
|
19.706
|
11.176
|
43.824
|
56.176
|
11.471
|
8.235
|
51.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
981.509
|
171.438
|
935.045
|
1263.630
|
2407.493
|
2973.720
|
1311.421
|
1035.467
|
15.471
|
495.667
|
289.868
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.220
|
2.745
|
0.541
|
0.898
|
0.318
|
-1.170
|
-1.629
|
0.485
|
-5.127
|
6.551
|
— | — | — |
No JSON data available for plots.