Hg_chrom9_TN10mRNA_16920
Organism: Heterodera glycines Gene Locus: chr9:2322518-2327056 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.986 | 0.928 | 0.816 | 1.72 | 0.748 | 0.639 | 0.772 | 0.998 | 1.607 | 1.584 | 0.453 | 1.76 | 2.147 | 0.623 | 1.221 | 1.033 | 0.491 | 0.945 | 1.151 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15985
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.803
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKAMCRKLMAKGKRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.080
|
0.036
|
0.044
|
0.159
|
0.344
|
0.435
|
0.516
|
0.011
|
0.859
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012559
|
1.000
|
1.000
|
Hsc_gene_26582.t1
|
Hsc_gene_26582.t1;Hsc_gene_385.t1
|
— |
O17204.2 Organic solute transporter alpha-like protein 1 [Caenorhabditis elegans]
|
KAI6226256.1 Organic solute transporter alpha-like protein 1 [Aphelenchoides fujianensis];KAI6239730.1 Organic solute transporter alpha-like protein 1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.919|GO:0110165_0.919|GO:0016020_0.868|GO:0071944_0.868|GO:0005886_0.851|GO:0098590_0.609|GO:1990075_0.540
|
IPR005178+36-320_38-308_41-305+
|
SM01417+38-308+
|
PF03619+41-305+Organic_solute_transporter_Ostalpha
|
— |
PTHR23423+36-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
377-401
|
1.000
|
1-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
44995.660
|
7.209
|
4.000
|
19.950
|
13.965
|
36.658
|
63.342
|
10.973
|
8.978
|
48.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
517.290
|
742.045
|
559.918
|
516.860
|
571.244
|
973.777
|
250.816
|
637.842
|
357.131
|
400.608
|
381.975
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.636
|
-0.659
|
— | — |
0.784
|
-1.948
|
-0.711
|
-1.207
|
— | — | — | — | — |
No JSON data available for plots.