Hg_chrom9_TN10mRNA_16924
Organism: Heterodera glycines Gene Locus: chr9:2342573-2345387 Feature type: polypeptideProtein Sequence
Length: 627
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.409 | 0.986 | 0.33 | 1.409 | 1.513 | 0.57 | 1.276 | 1.347 | 1.099 | 0.942 | 1.22 | 0.753 | 0.828 | 1.302 | 1.23 | 1.203 | 0.991 | 0.491 | 0.469 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15989
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RDIKRPK,RKRKSTICSGKTGSKLRKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.965
|
0.036
|
0.016
|
0.166
|
0.018
|
0.024
|
0.018
|
0.007
|
0.053
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012562
|
1.000
|
1.000
|
Hsc_gene_26588.t1
|
Hsc_gene_26588.t1
|
— |
Q96EZ8.1 Microspherule protein 1 [Homo sapiens]
|
KAI1731647.1 FHA domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002151|GO:0005515|GO:0031011|GO:0071339
|
GO:0008150_0.947|GO:0009987_0.904|GO:0065007_0.858|GO:0050789_0.846|GO:0050794_0.823|GO:0008152_0.797|GO:0043170_0.797|GO:0071840_0.795|GO:0016043_0.792|GO:0044238_0.784|GO:0006139_0.767|GO:0019222_0.762|GO:0048518_0.762|GO:0090304_0.751|GO:0060255_0.750|GO:0048522_0.749|GO:0080090_0.744|GO:0006996_0.735|GO:0009893_0.719|GO:0010604_0.716|GO:0019219_0.713|GO:0051128_0.703|GO:0045935_0.694|GO:0006259_0.688|GO:0033043_0.684|GO:0051276_0.683|GO:0033044_0.676|GO:0051052_0.676|GO:0032200_0.674|GO:0000723_0.670|GO:0032204_0.670|GO:0005575_0.654|GO:0110165_0.651|GO:0005622_0.621|GO:0016020_0.571|GO:0043226_0.570|GO:0043229_0.559|GO:0043227_0.525|GO:0003674_0.524|GO:0005737_0.517
|
IPR000253+525-582_526-582_526-598+|IPR008984+493-608+|IPR025999+297-443+|IPR037912+293-615+
|
SM00240+525-582+
|
PF00498+526-598+FHA_domain|PF13325+297-443+N-terminal_region_of_micro-spherule_protein
|
— |
PTHR13233+293-615+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
57-291
|
2.000
|
1-56;292-627
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
70662.420
|
6.514
|
0.000
|
29.027
|
7.496
|
56.938
|
43.062
|
15.152
|
13.876
|
49.282
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1653.285
|
2448.981
|
1786.953
|
1282.414
|
1365.081
|
1204.780
|
1581.282
|
1948.084
|
2768.834
|
799.908
|
1643.734
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.685
|
-1.070
|
-0.369
|
— |
-0.166
|
0.403
|
0.590
|
— |
1.675
|
— | — | — | — |
No JSON data available for plots.