Hg_chrom9_TN10mRNA_16927
Organism: Heterodera glycines Gene Locus: chr9:2349682-2350657 Feature type: polypeptideProtein Sequence
Length: 139
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.586 | 0.502 | 1.439 | 0.248 | 1.439 | 2.029 | 0.771 | 1.439 | 0.799 | 1.847 | 0.981 | 1.693 | 1.199 | 0.83 | 1.321 | 0.411 | 0.59 | 1.308 | 0.0 | 0.423 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15992
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.522
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.584
|
0.060
|
0.045
|
0.553
|
0.171
|
0.516
|
0.192
|
0.042
|
0.039
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012565
|
1.000
|
1.000
|
Hsc_gene_26591.t1
|
Hsc_gene_26591.t1
|
— |
Q8VC85.1 U6 snRNA-associated Sm-like protein LSm1 [Mus musculus]
|
KAI3419653.1 SM-like, degradation of cytoplasmic mRNAs and positively regulates transcription initiation [Globodera pallida]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000956|GO:0003723
|
GO:0005575_0.917|GO:0110165_0.914|GO:0005622_0.878|GO:0043226_0.806|GO:0043229_0.789|GO:0008150_0.773|GO:0009987_0.732|GO:0005737_0.666|GO:0016020_0.663|GO:0003674_0.645|GO:0005488_0.632|GO:0043227_0.591|GO:0043231_0.570|GO:0065007_0.561|GO:0050789_0.542|GO:0050794_0.516|GO:0097159_0.509
|
IPR001163+12-80_14-78+|IPR010920+14-112+|IPR034104+8-81+|IPR044642+10-116+|IPR047575+9-84+
|
SM00651+12-80+
|
PF01423+14-78+LSM_domain
|
— |
PTHR15588+10-116+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-139
|
6ppv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
15883.240
|
5.271
|
-3.000
|
32.374
|
8.633
|
48.921
|
51.079
|
15.827
|
16.547
|
41.727
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
307.030
|
400.056
|
245.961
|
299.751
|
323.172
|
396.783
|
753.668
|
308.215
|
173.110
|
190.573
|
183.089
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.932
|
-0.554
|
0.395
|
— |
0.311
|
0.938
|
-0.466
|
1.433
|
— | — | — | — | — |
No JSON data available for plots.