Hg_chrom9_TN10mRNA_16929
Organism: Heterodera glycines Gene Locus: chr9:2353675-2355877 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.318 | 1.186 | 0.464 | 0.684 | 0.992 | 0.872 | 0.911 | 1.416 | 1.322 | 1.416 | 0.558 | 0.833 | 1.023 | 0.817 | 1.272 | 1.012 | 0.557 | 1.331 | 0.654 | 1.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15994
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.079
|
0.400
|
0.038
|
0.142
|
0.827
|
0.276
|
0.236
|
0.010
|
0.237
|
0.173
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012567
|
1.000
|
1.000
|
Hsc_gene_26593.t1
|
Hsc_gene_26593.t1
|
— |
Q09517.2 Very-long-chain 3-oxooacyl-coA reductase let-767 [Caenorhabditis elegans]
|
ABC59300.1 17beta-hydroxysteroid dehydrogenase, partial [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.792|GO:0110165_0.785|GO:0008150_0.726|GO:0003674_0.694|GO:0016020_0.665|GO:0005622_0.639|GO:0005737_0.610|GO:0009987_0.585|GO:0043226_0.572|GO:0043229_0.554|GO:0043227_0.546|GO:0071944_0.542|GO:0003824_0.524|GO:0043231_0.520|GO:0008152_0.508
|
IPR002347+51-68_51-261_134-145_185-201_191-199_211-230+|IPR020904+198-226+|IPR036291+50-291+|IPR051019+4-335+
|
— |
PF00106+51-261+short_chain_dehydrogenase
|
— |
PTHR43899+4-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
323-353
|
1.000
|
1-322
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
38505.330
|
8.562
|
10.000
|
21.246
|
10.765
|
40.227
|
59.773
|
12.748
|
8.499
|
52.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
561.535
|
921.682
|
754.895
|
573.156
|
664.072
|
719.387
|
1058.084
|
629.206
|
327.840
|
215.653
|
263.733
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.518
|
-0.823
|
-0.289
|
0.181
|
— |
0.568
|
-0.298
|
0.893
|
— | — | — | — | — |
No JSON data available for plots.