Hg_chrom9_TN10mRNA_16930
Organism: Heterodera glycines Gene Locus: chr9:2356097-2357546 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.835 | 1.193 | 0.373 | 0.707 | 0.855 | 0.789 | 0.488 | 1.795 | 1.026 | 1.733 | 0.777 | 0.905 | 2.279 | 1.381 | 1.57 | 1.026 | 0.841 | 0.622 | 1.972 | 0.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15995
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
plastid
|
— | — |
36-56
|
0.927
|
12-62
|
1.000
|
— | — |
0.000
|
— | — |
0.192
|
0.534
|
0.760
|
0.158
|
0.040
|
0.039
|
0.021
|
0.048
|
0.062
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012568
|
1.000
|
1.000
|
Hsc_gene_26594.t1
|
Hsc_gene_26594.t1
|
— |
Q9VCC3.1 Small ribosomal subunit protein uS3m [Drosophila melanogaster]
|
KAF8371219.1 mrps-24 [Pristionchus pacificus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005739
|
GO:0005575_0.893|GO:0110165_0.893|GO:0005622_0.850|GO:0016020_0.838|GO:0043226_0.809|GO:0005737_0.806|GO:0043229_0.794|GO:0043227_0.779|GO:0043231_0.772|GO:0003674_0.614|GO:0005739_0.577
|
IPR026146+27-180_53-186+
|
— |
PF14955+53-186+Mitochondrial_ribosome_subunit_S24
|
— |
PTHR21244+27-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
22527.220
|
10.558
|
14.500
|
23.590
|
15.897
|
44.103
|
55.897
|
16.410
|
7.179
|
44.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
720.573
|
702.705
|
530.237
|
698.400
|
877.953
|
695.276
|
1180.918
|
613.563
|
169.880
|
1037.952
|
665.921
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.635
|
-0.146
|
0.505
|
0.298
|
-0.322
|
0.775
|
-0.285
|
1.088
|
-2.729
|
— | — | — | — |
No JSON data available for plots.