Hg_chrom9_TN10mRNA_16932

Organism: Heterodera glycines    Gene Locus: chr9:2360978-2363591    Feature type: polypeptide

Protein Sequence

Length: 437
FASTA 



  
  

    

      
        

          COMPOSITION
          
            Ala
          
            Asn
          
            Asp
          
            Cys
          
            Glu
          
            Gln
          
            Gly
          
            His
          
            Ile
          
            Leu
          
            Lys
          
            Met
          
            Phe
          
            Pro
          
            Arg
          
            Ser
          
            Thr
          
            Val
          
            Trp
          
            Tyr
          
            Xaa
          
        

      
      
        
ABUNDANCE
          
            
            
              0.825
              
            
            
          
            
            
              1.171
              
            
            
          
            
            
              1.373
              
            
            
          
            
            
              0.395
              
            
            
          
            
            
              1.259
              
            
            
          
            
            
              1.056
              
            
            
          
            
            
              0.708
              
            
            
          
            
            
              2.403
              
            
            
          
            
            
              1.068
              
            
            
          
            
            
              1.082
              
            
            
          
            
            
              0.624
              
            
            
          
            
            
              1.481
              
            
            
          
            
            
              0.89
              
            
            
          
            
            
              1.056
              
            
            
          
            
            
              0.654
              
            
            
          
            
            
              1.079
              
            
            
          
            
            
              0.975
              
            
            
          
            
            
              1.005
              
            
            
          
            
            
              2.288
              
            
            
          
            
            
              0.673
              
            
            
          
            
            
              0.0
              
            
            
          
        

      
    

  

  







  
No JSON data available for plots.



















Features


   TSV







    

      
        

            GENOMICS
          
            Gene Name
          
            Nested Gene
          
            (host gene)
          
            Average
          
            TN7
          
            TN8
          
            TN10
          
            TN20
          
            TN22
          
            MM26
          
            OP50
          
            PA3
          
            X12
          
        

      
      
        

          
            
              
Hg_chrom9_TN10gene_15997

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
        

      
    

  




    

      
        

            EFFECTORS
          
            SCN putative
          
            SCN known (N)
          
            SCN known (P)
          
            BCN known
          
            BCN putative
          
            Effector Islands
          
            Cluster Name
          
            (score)
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
11-Not_described

            		
          
            
              
0.986

            		
          
        

      
    

  




    

      
        

            SECRETION
          
            Secretion
          
            DL-signals
          
            DL-localization
          
            Localizer
          
            L-nucleus
          
            L-mitochondria
          
            (score)
          
            L-chloroplast
          
            (score)
          
            Signal Peptide
          
            (score_v5)
          
            (score_v6)
          
            (TM_v5)
          
            (TM_v6)
          
            nucleus
          
            mitochondrion
          
            plastid
          
            cytoplasm
          
            endoplasmic_reticulum
          
            lysosome_vacuole
          
            golgi_apparatus
          
            peroxisome
          
            peroxisome
          
            extracellular
          
        

      
      
        

          
            
              
not_secreted

            		
          
            
              
                —
              
            
          
            
              
nucleus

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.000

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.575

            		
          
            
              
0.098

            		
          
            
              
0.010

            		
          
            
              
0.436

            		
          
            
              
0.157

            		
          
            
              
0.150

            		
          
            
              
0.173

            		
          
            
              
0.022

            		
          
            
              
0.175

            		
          
            
              
0.052

            		
          
        

      
    

  




    

      
        

            HOMOLOGY
          
            Orthogroup
          
            (SCN counts)
          
            (BCN counts)
          
            (BCN genes)
          
            BCN hits
          
            C. elegans hits
          
            SP best hit
          
            NR best hit
          
            HGT Donor
          
            HGT Index
          
        

      
      
        

          
            
              
OG0002543

            		
          
            
              
3.000

            		
          
            
              
1.000

            		
          
            
              
Hsc_gene_26596.t1

            		
          
            
              
Hsc_gene_26596.t1

            		
          
            
              
                —
              
            
          
            
              
Q09028.3 Histone-binding protein RBBP4 [Homo sapiens]

            		
          
            
              
KAI3419659.1 retinoblastoma binding protein [Globodera pallida]

            		
          
            
              
No

            		
          
            
              
0.000

            		
          
        

      
    

  




    

      
        

            FUNCTIONAL
          
            TF
          
            GO terms
          
            DeepGoPlus
          
            InterPro
          
            SMART
          
            Pfam
          
            FunFam
          
            Panther
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
GO:0005515

            		
          
            
              
GO:0008150_0.878|GO:0005575_0.701|GO:0110165_0.690|GO:0009987_0.681|GO:0005622_0.624|GO:0016020_0.591|GO:0003674_0.581|GO:0043226_0.548|GO:0043229_0.541|GO:0043227_0.527|GO:0043231_0.521|GO:0065007_0.520|GO:0005488_0.509|GO:0050789_0.506

            		
          
            
              
IPR001680+115-156_168-208_170-208_175-217_218-258_223-258_225-267_264-304_266-304_271-307_308-348_312-348_315-350_365-405_369-404_372-406+|IPR015943+8-424+|IPR019775+195-209_291-305_335-349+|IPR020472+195-209_291-305_335-349+|IPR022052+22-91+|IPR036322+116-412+|IPR050459+15-416+

            		
          
            
              
SM00320+115-156_168-208_218-258_264-304_308-348_365-405+

            		
          
            
              
PF00400+170-208_223-258_266-304_312-348_369-404+WD_domain,_G-beta_repeat|PF12265+22-91+Histone-binding_protein_RBBP4_or_subunit_C_of_CAF1_complex

            		
          
            
              
G3DSA:2.130.10.10:FF:000021+8-428+histone-binding_protein_RBBP4_isoform_X1

            		
          
            
              
PTHR22850+15-416+

            		
          
        

      
    

  




    

      
        

            SEQUENCE
          
            Protein Sequence
          
        

      
      
        

          
            
              
                —
              
            
          
        

      
    

  




    

      
        

            STRUCTURE
          
            Disorder
          
            (regions)
          
            Ordered
          
            (regions)
          
            PDB
          
            (hit type)
          
        

      
      
        

          
            
              
regions

            		
          
            
              
1-21;416-437

            		
          
            
              
1.000

            		
          
            
              
22-415

            		
          
            
              
6nq3_E

            		
          
            
              
STRUCT_HOMOLOG

            		
          
        

      
    

  




    

      
        

            BIOPHYSICS
          
            Inclusion Body
          
            Mol weight
          
            pI
          
            Net Charge
          
            Charged
          
            Aromatic
          
            Polar
          
            Non-polar
          
            Basic
          
            Acidic
          
            Small
          
        

      
      
        

          
            
              
0.766

            		
          
            
              
49070.600

            		
          
            
              
4.610

            		
          
            
              
-23.500

            		
          
            
              
27.231

            		
          
            
              
13.272

            		
          
            
              
49.886

            		
          
            
              
50.114

            		
          
            
              
12.128

            		
          
            
              
15.103

            		
          
            
              
52.403

            		
          
        

      
    

  




    

      
        

            EXPRESSION
          
            Bin13
          
            Bin38
          
            Average
          
            Egg
          
            ppJ2
          
            pJ2
          
            J3
          
            J4
          
            Female
          
            Male
          
            Gland (J2)
          
            Gland (J3)
          
            Gland (J2+J3)
          
        

      
      
        

          
            
              
skyblue

            		
          
            
              
darkgrey

            		
          
            
              
1627.855

            		
          
            
              
1810.981

            		
          
            
              
1166.747

            		
          
            
              
1853.482

            		
          
            
              
2146.946

            		
          
            
              
1531.865

            		
          
            
              
2038.939

            		
          
            
              
1202.417

            		
          
            
              
815.984

            		
          
            
              
2103.110

            		
          
            
              
1551.485

            		
          
        

      
    

  




    

      
        

            DGE
          
            Egg vs ppJ2
          
            Egg vs pJ2
          
            ppJ2 vs pJ2
          
            pJ2 vs J3
          
            J3 vs J4
          
            J4 vs F
          
            J4 vs M
          
            F vs M
          
            G(J3 vs J2)
          
            G(J2) vs pJ2
          
            G(J3) vs J3
          
            G(J2) lines
          
            G(J3) lines
          
        

      
      
        

          
            
              
-0.863

            		
          
            
              
-0.103

            		
          
            
              
0.776

            		
          
            
              
0.180

            		
          
            
              
-0.472

            		
          
            
              
0.423

            		
          
            
              
-0.455

            		
          
            
              
0.905

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
        

      
    

  











  
No JSON data available for plots.









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