Hg_chrom9_TN10mRNA_16934
Organism: Heterodera glycines Gene Locus: chr9:2365534-2366612 Feature type: polypeptideProtein Sequence
Length: 159
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.585 | 0.731 | 1.029 | 0.217 | 0.839 | 0.968 | 1.423 | 0.314 | 1.398 | 1.19 | 0.572 | 0.74 | 1.398 | 0.363 | 1.925 | 0.719 | 1.753 | 0.667 | 2.419 | 1.295 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_15999
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
20-40
|
0.948
|
— | — | — | — |
0.000
|
— | — |
0.383
|
0.268
|
0.060
|
0.615
|
0.122
|
0.042
|
0.081
|
0.146
|
0.026
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004906
|
2.000
|
1.000
|
Hsc_gene_13186.t1
|
Hsc_gene_13186.t1;Hsc_gene_13191.t1
|
— |
O96650.1 Thymidylate synthase [Ascaris suum]
|
KAI6223063.1 Thymidylate synthase [Aphelenchoides fujianensis]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004799|GO:0006231|GO:0016741
|
GO:0003674_0.799|GO:0005575_0.705|GO:0003824_0.698|GO:0110165_0.694|GO:0008150_0.636|GO:0009987_0.559|GO:0005622_0.536|GO:0016740_0.505|GO:0008152_0.504
|
IPR000398+2-155_42-63_135-154+|IPR023451+2-155_3-155+|IPR036926+1-158_2-156+|IPR045097+2-155+
|
— |
PF00303+2-155+Thymidylate_synthase
|
— |
PTHR11548+2-155+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-159
|
7dp6_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
18060.410
|
9.606
|
4.500
|
24.528
|
13.208
|
47.170
|
52.830
|
13.836
|
10.692
|
48.428
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightgreen
|
81.703
|
49.000
|
31.285
|
63.556
|
76.888
|
38.353
|
108.970
|
36.734
|
74.153
|
150.043
|
117.518
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.878
|
— |
1.133
|
— |
-0.988
|
1.518
|
— |
1.717
|
— | — | — | — | — |
No JSON data available for plots.