Hg_chrom9_TN10mRNA_16937
Organism: Heterodera glycines Gene Locus: chr9:2370729-2372244 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.842 | 1.158 | 1.07 | 0.468 | 1.056 | 0.812 | 0.808 | 1.584 | 1.207 | 1.162 | 0.548 | 1.863 | 0.754 | 0.957 | 1.016 | 1.81 | 0.89 | 0.823 | 2.436 | 0.266 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16002
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
26-47
|
0.988
|
34-65
|
0.981
|
— | — |
0.000
|
— | — |
0.433
|
0.293
|
0.082
|
0.585
|
0.110
|
0.102
|
0.276
|
0.189
|
0.071
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002543
|
3.000
|
1.000
|
Hsc_gene_26596.t1
|
Hsc_gene_26596.t1
|
— |
Q5R654.1 Histone-binding protein RBBP7 [Pongo abelii]
|
KAK6031045.1 WD domain, G-beta repeat protein, partial [Ostertagia ostertagi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.861|GO:0005575_0.745|GO:0110165_0.738|GO:0005622_0.678|GO:0009987_0.674|GO:0016020_0.658|GO:0043226_0.622|GO:0043229_0.607|GO:0043227_0.587|GO:0043231_0.583|GO:0065007_0.548|GO:0003674_0.545|GO:0050789_0.531|GO:0005488_0.510
|
IPR001680+46-88_60-88_62-91_92-132_96-132_99-134_149-189_153-188_156-190+|IPR015943+2-208+|IPR019775+75-89_119-133+|IPR020472+75-89_119-133_176-190+|IPR036322+48-197+|IPR050459+58-200+
|
SM00320+46-88_92-132_149-189+
|
PF00400+60-88_96-132_153-188+WD_domain,_G-beta_repeat
|
— |
PTHR22850+58-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
200-221
|
1.000
|
1-199
|
2xyi_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
24328.260
|
5.281
|
-4.500
|
23.982
|
9.955
|
50.226
|
49.774
|
11.765
|
12.217
|
54.751
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
— |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.