Hg_chrom9_TN10mRNA_16941
Organism: Heterodera glycines Gene Locus: chr9:2375268-2379219 Feature type: polypeptideProtein Sequence
Length: 550
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.099 | 1.289 | 1.442 | 1.455 | 1.678 | 0.476 | 1.636 | 0.646 | 1.007 | 0.744 | 0.963 | 0.96 | 0.769 | 1.744 | 0.961 | 0.805 | 0.496 | 1.119 | 0.642 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16005
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,QKERRARKREELK,RRPLHQRDQCLRGERR,KRLAQKAQEWQESIRQKER
|
— | — | — | — | — | — |
0.001
|
— | — |
0.849
|
0.178
|
0.017
|
0.226
|
0.020
|
0.020
|
0.033
|
0.003
|
0.058
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001453
|
4.000
|
1.000
|
Hsc_gene_26599.t1
|
Hsc_gene_13185.t1;Hsc_gene_13187.t1;Hsc_gene_13189.t1;Hsc_gene_13189.t2;Hsc_gene_13190.t1;Hsc_gene_26597.t1;Hsc_gene_26599.t1
|
— |
A0JMK9.1 Chromatin assembly factor 1 subunit A [Danio rerio]
|
KAF7638517.1 RUN domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.820
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0009987_0.918|GO:0016043_0.700|GO:0071840_0.700|GO:0005575_0.686|GO:0110165_0.678|GO:0005622_0.615|GO:0043226_0.553|GO:0065007_0.533|GO:0016020_0.525|GO:0043229_0.519|GO:0050789_0.519|GO:0050794_0.507
|
IPR022043+118-189+|IPR025258+369-528_398-504+
|
SM01175+369-528+
|
PF12253+118-189+Chromatin_assembly_factor_1_subunit_A|PF13901+398-504+Rubicon_Homology_Domain
|
— |
PTHR15272+55-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
61-279
|
2.000
|
1-60;280-550
|
8iqg_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
62837.820
|
6.144
|
-4.000
|
32.545
|
10.364
|
55.455
|
44.545
|
16.727
|
15.818
|
48.909
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
139.770
|
33.442
|
38.272
|
54.525
|
86.093
|
61.453
|
329.374
|
123.983
|
269.181
|
136.930
|
193.609
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.568
|
0.622
|
0.628
|
-0.472
|
2.435
|
0.902
|
1.556
|
— | — | — | — | — |
No JSON data available for plots.