Hg_chrom9_TN10mRNA_16944
Organism: Heterodera glycines Gene Locus: chr9:2383665-2384668 Feature type: polypeptideProtein Sequence
Length: 217
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.643 | 0.75 | 0.67 | 0.318 | 1.152 | 1.3 | 0.494 | 0.922 | 0.922 | 0.81 | 1.047 | 2.711 | 1.024 | 2.393 | 1.317 | 0.987 | 1.209 | 1.047 | 1.418 | 0.407 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16007
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.909
|
0.083
|
0.038
|
0.319
|
0.032
|
0.034
|
0.054
|
0.004
|
0.046
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001453
|
4.000
|
1.000
|
Hsc_gene_26599.t1
|
Hsc_gene_13187.t1;Hsc_gene_13189.t1;Hsc_gene_13189.t2;Hsc_gene_26597.t1
|
— |
Q9I8G9.1 Histone-binding protein RBBP7 [Gallus gallus]
|
KAI3419659.1 retinoblastoma binding protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.863|GO:0005575_0.732|GO:0110165_0.715|GO:0009987_0.675|GO:0005622_0.672|GO:0016020_0.656|GO:0043226_0.631|GO:0043229_0.616|GO:0043227_0.599|GO:0043231_0.588|GO:0065007_0.575|GO:0050789_0.560|GO:0003674_0.539|GO:0005488_0.509|GO:0005634_0.506|GO:0050794_0.504
|
IPR015943+125-205+|IPR036322+150-190+|IPR050459+110-196+
|
— | — | — |
PTHR22850+110-196+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-86;200-217
|
1.000
|
87-199
|
3cfv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.925
|
24560.330
|
9.938
|
8.000
|
25.806
|
8.756
|
48.387
|
51.613
|
15.207
|
10.599
|
51.152
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
purple
|
39.507
|
39.675
|
26.355
|
50.874
|
73.563
|
46.066
|
65.088
|
28.860
|
4.112
|
45.830
|
27.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.825
|
— |
1.060
|
0.499
|
-0.660
|
0.512
|
— |
1.323
|
— | — | — | — | — |
No JSON data available for plots.