Hg_chrom9_TN10mRNA_16945
Organism: Heterodera glycines Gene Locus: chr9:2386669-2392735 Feature type: polypeptideProtein Sequence
Length: 1,039
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.018 | 1.142 | 0.91 | 0.863 | 0.946 | 1.234 | 0.745 | 1.396 | 0.984 | 1.171 | 0.642 | 1.302 | 1.15 | 0.999 | 1.257 | 1.581 | 0.962 | 0.758 | 0.592 | 0.453 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16008
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RHRR
|
— | — |
49-98
|
0.987
|
— | — |
0.000
|
— | — |
0.212
|
0.181
|
0.032
|
0.605
|
0.127
|
0.377
|
0.259
|
0.047
|
0.290
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012570
|
1.000
|
1.000
|
Hsc_gene_13185.t1
|
Hsc_gene_13185.t1;Hsc_gene_13190.t1
|
— | — |
KAH7727338.1 RUN domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.940|GO:0009987_0.864|GO:0005575_0.708|GO:0110165_0.702|GO:0065007_0.618|GO:0005622_0.614|GO:0050789_0.604|GO:0016043_0.586|GO:0071840_0.586|GO:0016020_0.584|GO:0050794_0.562|GO:0043226_0.542|GO:0051179_0.526|GO:0043229_0.515
|
IPR004012+43-177_52-173_112-175+|IPR025258+787-1017_788-993+|IPR037213+11-183_48-181+|IPR051366+33-1026+
|
SM00593+112-175+|SM01175+787-1017+
|
PF02759+52-173+RUN_domain|PF13901+788-993+Rubicon_Homology_Domain
|
— |
PTHR12326+33-1026+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;261-480;545-711
|
3.000
|
8-260;481-544;712-1039
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
113734.000
|
7.223
|
11.500
|
23.869
|
9.240
|
50.529
|
49.471
|
13.186
|
10.683
|
54.572
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
935.129
|
2425.242
|
989.214
|
797.188
|
752.483
|
798.216
|
1495.628
|
917.074
|
411.639
|
716.819
|
586.027
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.523
|
-1.742
|
-0.203
|
-0.115
|
— |
0.916
|
— |
0.848
|
— | — | — | — | — |
No JSON data available for plots.