Hg_chrom9_TN10mRNA_16948
Organism: Heterodera glycines Gene Locus: chr9:2398805-2403579 Feature type: polypeptideProtein Sequence
Length: 686
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 1.288 | 0.875 | 1.508 | 1.166 | 1.42 | 0.625 | 1.458 | 0.842 | 0.788 | 1.171 | 1.372 | 1.093 | 0.953 | 1.696 | 0.812 | 0.836 | 1.082 | 1.233 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16011
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.884
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RGRKRK.,KKRPTAVGADKCKGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.952
|
0.092
|
0.069
|
0.167
|
0.020
|
0.028
|
0.023
|
0.009
|
0.033
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012572
|
1.000
|
1.000
|
Hsc_gene_13174.t1
|
Hsc_gene_13174.t1
|
— |
Q9NQC1.2 E3 ubiquitin-protein ligase Jade-2 [Homo sapiens]
|
KAI3419674.1 Protein Jade-1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.839|GO:0009987_0.792|GO:0005575_0.765|GO:0110165_0.765|GO:0005622_0.684|GO:0065007_0.677|GO:0050789_0.670|GO:0003674_0.626|GO:0043226_0.624|GO:0016020_0.609|GO:0043229_0.606|GO:0050794_0.601|GO:0043227_0.527|GO:0043231_0.505
|
IPR001965+296-342_408-465+|IPR011011+287-360+|IPR013083+281-345_346-467+|IPR019786+297-341+|IPR019787+294-344_309-342+|IPR034732+349-465+|IPR050701+15-626+
|
SM00249+296-342_408-465+
|
PF13831+309-342+PHD-finger|PF13832+351-464+PHD-zinc-finger_like_domain
|
— |
PTHR13793+15-626+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-108;545-595;655-686
|
2.000
|
109-544;596-654
|
8ge0_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
78758.850
|
9.210
|
39.000
|
30.758
|
10.496
|
52.624
|
47.376
|
18.950
|
11.808
|
48.980
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1033.766
|
1882.006
|
1021.660
|
685.378
|
872.913
|
765.615
|
1669.361
|
770.109
|
546.535
|
1237.686
|
941.479
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.112
|
-1.595
|
-0.467
|
0.317
|
— |
1.135
|
— |
1.257
|
— | — | — | — | — |
No JSON data available for plots.