SCN Proteipedia

Hg_chrom9_TN10mRNA_16949

Organism: Heterodera glycines Gene Locus: chr9:2403597-2406683 Feature type: polypeptide

Protein Sequence

Length: 362

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.385	1.413	0.502	0.953	1.013	1.133	0.46	1.519	1.166	1.419	0.963	1.95	1.228	0.956	1.522	1.579	0.77	0.628	1.275	1.137	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16012	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RSSKRPR,RSIKRKV	23-61	0.960	14-37	1.000	—	—	0.000	—	—	0.930	0.078	0.034	0.244	0.018	0.023	0.023	0.014	0.023	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012573	1.000	1.000	Hsc_gene_13175.t1	Hsc_gene_13175.t1;Hsc_gene_13175.t2	—	Q9H7Z6.2 Histone acetyltransferase KAT8 [Homo sapiens]	KAH7700360.1 MOZ/SAS family protein, partial [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004402\|GO:0006355	GO:0008150_0.947\|GO:0009987_0.898\|GO:0005575_0.792\|GO:0065007_0.780\|GO:0110165_0.778\|GO:0050789_0.776\|GO:0003674_0.753\|GO:0005622_0.731\|GO:0008152_0.728\|GO:0043170_0.698\|GO:0050794_0.698\|GO:0043226_0.695\|GO:0043229_0.684\|GO:0009058_0.651\|GO:0071840_0.648\|GO:0016020_0.645\|GO:0016043_0.644\|GO:0019222_0.640\|GO:0044237_0.620\|GO:0044249_0.614\|GO:0009889_0.610\|GO:0009059_0.608\|GO:0031323_0.604\|GO:0010467_0.598\|GO:0003824_0.597\|GO:0060255_0.597\|GO:0043227_0.589\|GO:0010556_0.576\|GO:0031326_0.576\|GO:0043231_0.574\|GO:0010468_0.572\|GO:0016740_0.572\|GO:0140096_0.569\|GO:0006325_0.563\|GO:0006338_0.563\|GO:0016746_0.556\|GO:0016747_0.543\|GO:0004402_0.539\|GO:0008080_0.539\|GO:0016407_0.539\|GO:0016410_0.539\|GO:0034212_0.539\|GO:0061733_0.539\|GO:0140993_0.539\|GO:0044238_0.527	IPR002717+70-343_132-311+\|IPR016181+75-323+\|IPR036388+252-331+\|IPR040706+73-127+\|IPR050603+36-347+	—	PF01853+132-311+MOZ/SAS_family\|PF17772+73-127+MYST_family_zinc_finger_domain	—	PTHR10615+36-347+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-64	1.000	65-362	2rc4_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.851	42144.470	9.851	23.500	25.691	12.983	51.934	48.066	16.851	8.840	43.646

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	lightgreen	547.005	637.985	487.023	372.166	468.493	431.565	891.741	600.602	162.166	812.934	534.033

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.619	-0.915	-0.280	0.301	—	1.058	0.373	0.712	—	—	—	—	—

No JSON data available for plots.

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