SCN Proteipedia

Hg_chrom9_TN10mRNA_16950

Organism: Heterodera glycines Gene Locus: chr9:2407008-2410081 Feature type: polypeptide

Protein Sequence

Length: 452

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.978	1.338	1.086	1.068	0.701	1.191	0.685	1.327	0.934	1.644	0.268	1.041	1.352	1.149	1.851	0.695	0.834	0.872	1.361	0.651	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16013	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.294	0.350	0.007	0.484	0.118	0.272	0.210	0.025	0.141	0.118

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012574	1.000	1.000	Hsc_gene_13176.t1	Hsc_gene_13176.t1	—	—	XP_052832090.1 F-box/WD repeat-containing protein 9 [Octopus bimaculoides];XP_052832091.1 F-box/WD repeat-containing protein 9 [Octopus bimaculoides];XP_052832092.1 F-box/WD repeat-containing protein 9 [Octopus bimaculoides];XP_052832093.1 F-box/WD repeat-containing protein 9 [Octopus bimaculoides]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.946\|GO:0009987_0.890\|GO:0005575_0.889\|GO:0110165_0.885\|GO:0065007_0.848\|GO:0050789_0.832\|GO:0050794_0.818\|GO:0050896_0.796\|GO:0032501_0.771\|GO:0051716_0.765\|GO:0032502_0.757\|GO:0048856_0.757\|GO:0007154_0.746\|GO:0048518_0.746\|GO:0023052_0.744\|GO:0051179_0.739\|GO:0007275_0.738\|GO:0048522_0.733\|GO:0048731_0.732\|GO:0071840_0.731\|GO:0006810_0.730\|GO:0007165_0.730\|GO:0051234_0.730\|GO:0016043_0.728\|GO:0030154_0.723\|GO:0048869_0.723\|GO:0048468_0.714\|GO:0010646_0.712\|GO:0023051_0.710\|GO:0007399_0.707\|GO:0048583_0.707\|GO:0065008_0.705\|GO:0051239_0.704\|GO:0007166_0.700\|GO:0009966_0.700\|GO:0022008_0.699\|GO:0051641_0.698\|GO:0032879_0.696\|GO:0009628_0.694\|GO:0048699_0.694\|GO:0010647_0.693\|GO:0006996_0.692\|GO:0009605_0.692\|GO:0023056_0.691\|GO:0030182_0.691\|GO:0051049_0.690\|GO:0003008_0.689\|GO:0048584_0.688\|GO:0048666_0.687\|GO:0055085_0.687\|GO:0007267_0.686\|GO:0051649_0.686\|GO:0051240_0.685\|GO:0006811_0.684\|GO:0061024_0.684\|GO:0030054_0.681\|GO:0045202_0.681\|GO:0099536_0.681\|GO:0007268_0.680\|GO:0016192_0.680\|GO:0044057_0.680\|GO:0046903_0.680\|GO:0098916_0.680\|GO:0099537_0.680\|GO:0034220_0.679\|GO:0140352_0.679\|GO:0016050_0.678\|GO:0032940_0.678\|GO:0007610_0.677\|GO:0050877_0.677\|GO:0032101_0.676\|GO:0032103_0.676\|GO:0007600_0.675\|GO:0009612_0.675\|GO:0023061_0.675\|GO:0042391_0.674\|GO:0050804_0.674\|GO:0051606_0.674\|GO:0051640_0.674\|GO:0051656_0.674\|GO:0061025_0.674\|GO:0099177_0.674\|GO:0051050_0.673\|GO:0003012_0.670\|GO:0006836_0.670\|GO:0006887_0.670\|GO:0006903_0.670\|GO:0006906_0.670\|GO:0006936_0.670\|GO:0006937_0.670\|GO:0007269_0.670\|GO:0007638_0.670\|GO:0009581_0.670\|GO:0009582_0.670\|GO:0016079_0.670\|GO:0016080_0.670\|GO:0031644_0.670\|GO:0031646_0.670\|GO:0032228_0.670\|GO:0032230_0.670\|GO:0045055_0.670\|GO:0045933_0.670\|GO:0048284_0.670\|GO:0048489_0.670\|GO:0048520_0.670\|GO:0050795_0.670\|GO:0050806_0.670\|GO:0050906_0.670\|GO:0050954_0.670\|GO:0050974_0.670\|GO:0050975_0.670\|GO:0050976_0.670\|GO:0050982_0.670\|GO:0051648_0.670\|GO:0051650_0.670\|GO:0051931_0.670\|GO:0051932_0.670\|GO:0060078_0.670\|GO:0060080_0.670\|GO:0090174_0.670\|GO:0090257_0.670\|GO:0097151_0.670\|GO:0097479_0.670\|GO:0098793_0.670\|GO:0098794_0.670\|GO:0098828_0.670\|GO:0099003_0.670\|GO:0099500_0.670\|GO:0099504_0.670\|GO:0099565_0.670\|GO:0099643_0.670\|GO:0140029_0.670\|GO:1902803_0.670\|GO:1902805_0.670\|GO:1905787_0.670\|GO:1905789_0.670\|GO:1905790_0.670\|GO:1905792_0.670\|GO:0036477_0.553\|GO:0044297_0.552\|GO:0043025_0.549\|GO:0043204_0.540	IPR001680+168-208_176-217_177-207_255-295_329-366+\|IPR001810+1-47+\|IPR015943+90-439+\|IPR036322+123-444+	SM00320+168-208_255-295_329-366+	PF00400+177-207+WD_domain,_G-beta_repeat	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-452	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.739	51162.530	7.880	9.000	23.673	11.504	44.027	55.973	13.496	10.177	50.664

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	665.584	1670.255	701.261	649.365	614.378	666.522	819.904	620.714	489.026	391.761	433.446

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.482	-1.500	—	—	—	0.310	—	0.545	—	—	—	—	—

No JSON data available for plots.

Back to Browser