Hg_chrom9_TN10mRNA_16955
Organism: Heterodera glycines Gene Locus: chr9:2427045-2430738 Feature type: polypeptideProtein Sequence
Length: 771
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.131 | 0.995 | 0.755 | 0.805 | 1.038 | 0.665 | 0.803 | 1.167 | 1.499 | 1.315 | 0.629 | 0.916 | 1.045 | 0.948 | 1.244 | 1.241 | 0.914 | 1.297 | 0.698 | 0.267 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16018
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRRP,RRISMPKTDAVKVSRR
|
19-39
|
0.999
|
5-65
|
0.999
|
— | — |
0.000
|
— | — |
0.153
|
0.822
|
0.029
|
0.289
|
0.077
|
0.143
|
0.138
|
0.021
|
0.031
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012578
|
1.000
|
1.000
|
Hsc_gene_13172.t1
|
Hsc_gene_13172.t1
|
— |
Q9USY1.1 Pseudouridine-metabolizing bifunctional protein C1861.05 [Schizosaccharomyces pombe 972h-]
|
KAI1730495.1 indigoidine synthase A like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004730|GO:0016301
|
GO:0005575_0.854|GO:0110165_0.849|GO:0005622_0.755|GO:0005737_0.717|GO:0003674_0.595|GO:0008150_0.557|GO:0016020_0.536
|
IPR002173+430-454+|IPR007342+55-353_56-348+|IPR011611+663-747+|IPR022830+48-354_50-350+|IPR029056+383-770_387-744+
|
— |
PF00294+663-747+pfkB_family_carbohydrate_kinase|PF04227+56-348+Indigoidine_synthase_A_like_protein
|
— |
PTHR42909+39-758+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
771-771
|
1.000
|
1-770
|
8k05_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
83365.810
|
7.304
|
8.000
|
22.957
|
7.912
|
44.099
|
55.901
|
12.581
|
10.376
|
54.994
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
greenyellow
|
1394.529
|
514.785
|
752.660
|
595.183
|
830.751
|
858.825
|
1406.270
|
969.294
|
134.118
|
3777.562
|
2216.086
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.317
|
— |
-0.229
|
0.450
|
— |
0.723
|
— |
0.681
|
-4.918
|
— | — | — | — |
No JSON data available for plots.