Hg_chrom9_TN10mRNA_16959
Organism: Heterodera glycines Gene Locus: chr9:2436804-2448733 Feature type: polypeptideProtein Sequence
Length: 2,569
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.991 | 1.005 | 0.771 | 0.953 | 1.096 | 1.317 | 0.491 | 1.713 | 0.9 | 1.657 | 0.607 | 1.03 | 1.471 | 1.07 | 1.207 | 1.101 | 0.715 | 1.032 | 1.048 | 0.527 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16021
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.677
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.524
|
0.248
|
0.008
|
0.548
|
0.190
|
0.238
|
0.093
|
0.106
|
0.161
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001428
|
3.000
|
2.000
|
Hsc_gene_13168.t1;Hsc_gene_13168.t2
|
Hsc_gene_13168.t1;Hsc_gene_13168.t2;Hsc_gene_13169.t1;Hsc_gene_13169.t2
|
— |
Q18892.2 Ectopic P granules protein 5 [Caenorhabditis elegans]
|
KAH7702444.1 Protein EPG-5 [Aphelenchus avenae]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.965|GO:0009987_0.925|GO:0008152_0.803|GO:0005575_0.787|GO:0110165_0.774|GO:0044237_0.770|GO:0005622_0.700|GO:0065007_0.641|GO:0071840_0.641|GO:0016043_0.640|GO:0009056_0.620|GO:0050789_0.618|GO:0044248_0.605|GO:0061919_0.601|GO:0006914_0.600|GO:0050794_0.596|GO:0003674_0.565|GO:0005737_0.564|GO:0016236_0.532|GO:0006996_0.502
|
IPR051436+119-2480+
|
— | — | — |
PTHR31139+119-2480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-187
|
1.000
|
188-2569
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
289067.610
|
6.910
|
21.000
|
24.173
|
11.872
|
45.699
|
54.301
|
13.351
|
10.821
|
48.424
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
2196.934
|
5430.753
|
1502.466
|
1655.741
|
2849.253
|
2748.924
|
3363.035
|
1465.509
|
858.107
|
1837.124
|
1417.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.084
|
-1.851
|
0.249
|
0.752
|
— |
0.299
|
-1.016
|
1.340
|
— | — | — | — | — |
No JSON data available for plots.