Hg_chrom9_TN10mRNA_16962
Organism: Heterodera glycines Gene Locus: chr9:2467899-2470187 Feature type: polypeptideProtein Sequence
Length: 340
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.265 | 0.958 | 1.176 | 0.406 | 0.588 | 0.905 | 0.84 | 1.471 | 0.915 | 1.272 | 0.624 | 0.519 | 1.552 | 0.962 | 0.6 | 1.176 | 1.061 | 1.07 | 1.584 | 1.298 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16024
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.694
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.312
|
0.122
|
0.064
|
0.693
|
0.359
|
0.183
|
0.424
|
0.076
|
0.084
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002544
|
2.000
|
2.000
|
Hsc_gene_13163.t1;Hsc_gene_13163.t2
|
Hsc_gene_13163.t1;Hsc_gene_13163.t2
|
— |
H2KYQ5.1 Glycogenin-1 [Caenorhabditis elegans]
|
KAI1707889.1 glycosyl transferase family 8 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016757
|
GO:0008150_0.916|GO:0003674_0.792|GO:0009987_0.790|GO:0008152_0.750|GO:0044238_0.720|GO:0003824_0.698|GO:0009058_0.664|GO:0044237_0.650|GO:0005575_0.627|GO:0110165_0.618|GO:0016740_0.612|GO:0044249_0.610|GO:0005975_0.598|GO:0043170_0.590|GO:0016757_0.575|GO:0016758_0.574|GO:0009059_0.566|GO:0008194_0.555|GO:0016051_0.555|GO:0005976_0.530|GO:0005622_0.529|GO:0000271_0.523|GO:0005737_0.511
|
IPR002495+11-225+|IPR029044+6-257_7-253+|IPR050587+8-271+
|
— |
PF01501+11-225+Glycosyl_transferase_family_8
|
G3DSA:3.90.550.10:FF:000092+6-257+Glycogenin_2
|
PTHR11183+8-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-340
|
1zct_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
37212.880
|
5.521
|
-5.000
|
20.000
|
15.000
|
42.353
|
57.647
|
10.000
|
10.000
|
56.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
1761.581
|
786.019
|
832.859
|
1070.508
|
1382.670
|
2789.098
|
6654.887
|
2408.736
|
182.828
|
1598.006
|
991.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.146
|
0.309
|
0.471
|
0.337
|
1.027
|
1.266
|
-0.321
|
1.611
|
-3.279
|
— | — | — | — |
No JSON data available for plots.