Hg_chrom9_TN10mRNA_16963
Organism: Heterodera glycines Gene Locus: chr9:2467899-2470187 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.392 | 0.978 | 1.294 | 0.446 | 0.593 | 0.913 | 0.925 | 1.456 | 0.719 | 1.312 | 0.686 | 0.571 | 1.528 | 0.809 | 0.594 | 0.832 | 1.061 | 1.079 | 1.743 | 1.428 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16024
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.694
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.324
|
0.103
|
0.085
|
0.687
|
0.312
|
0.142
|
0.373
|
0.093
|
0.094
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002544
|
2.000
|
2.000
|
Hsc_gene_13163.t1;Hsc_gene_13163.t2
|
Hsc_gene_13163.t1;Hsc_gene_13163.t2
|
— |
H2KYQ5.1 Glycogenin-1 [Caenorhabditis elegans]
|
KAI1707889.1 glycosyl transferase family 8 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016757
|
GO:0008150_0.912|GO:0003674_0.812|GO:0009987_0.781|GO:0008152_0.759|GO:0003824_0.740|GO:0044238_0.723|GO:0009058_0.665|GO:0044237_0.654|GO:0016740_0.623|GO:0005575_0.611|GO:0044249_0.608|GO:0005975_0.602|GO:0110165_0.597|GO:0043170_0.585|GO:0016757_0.579|GO:0016758_0.577|GO:0009059_0.563|GO:0008194_0.558|GO:0016051_0.556|GO:0005976_0.532|GO:0000271_0.524|GO:0005622_0.506|GO:0005737_0.506
|
IPR002495+11-225+|IPR029044+6-257_7-253+|IPR050587+8-257+
|
— |
PF01501+11-225+Glycosyl_transferase_family_8
|
G3DSA:3.90.550.10:FF:000092+6-257+Glycogenin_2
|
PTHR11183+8-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-309
|
1zct_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.536
|
33915.170
|
5.294
|
-5.500
|
21.036
|
15.534
|
41.100
|
58.900
|
10.356
|
10.680
|
55.987
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
turquoise
|
1761.581
|
786.019
|
832.859
|
1070.508
|
1382.670
|
2789.098
|
6654.887
|
2408.736
|
182.828
|
1598.006
|
991.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.146
|
0.309
|
0.471
|
0.337
|
1.027
|
1.266
|
-0.321
|
1.611
|
-3.279
|
— | — | — | — |
No JSON data available for plots.