SCN Proteipedia

Hg_chrom9_TN10mRNA_16968

Organism: Heterodera glycines Gene Locus: chr9:2484437-2504989 Feature type: polypeptide

Protein Sequence

Length: 2,567

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.196	0.997	0.815	0.846	0.883	1.109	0.969	1.383	0.701	0.911	0.732	1.123	0.757	1.056	1.614	1.647	1.111	0.714	0.869	0.309	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16027	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Not_Clustered	0.846

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRRS,PKGKRRK,KRSRRRSK,RRRNSSKRTRKRSKT,RKSASIRRVSGRRKGG,RRKGGQRQASARRAAR,RKRISAARLAMRKISR,KRAAAIQEQEQKRVSK,RKGAERSNSTKERTKKC,KKDEENNKSSNSRRRNS,KKPTKGGAKSNANSRRCQR,KRLGWHGSAARRAMRKRIS,KKGGKKAKGNWENEKEGKK,KKCGDSGDGMALPATARRR	31-51	0.993	—	—	—	—	0.000	—	—	0.271	0.256	0.079	0.630	0.215	0.324	0.258	0.105	0.539	0.069

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004907	2.000	1.000	Hsc_gene_13158.t1	Hsc_gene_13158.t1;Hsc_gene_13159.t1	—	Q10024.2 Putative diacylglycerol kinase K06A1.6 [Caenorhabditis elegans]	KAF7640242.1 Diacylglycerol kinase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004143\|GO:0007165\|GO:0007205\|GO:0016301	GO:0005575_0.859\|GO:0008150_0.859\|GO:0110165_0.853\|GO:0003674_0.809\|GO:0009987_0.804\|GO:0003824_0.665\|GO:0065007_0.656\|GO:0005622_0.655\|GO:0016740_0.611\|GO:0016020_0.602\|GO:0016772_0.586\|GO:0016301_0.582\|GO:0016773_0.581\|GO:0001727_0.577\|GO:0004143_0.577\|GO:0008152_0.542\|GO:0032501_0.535\|GO:0050896_0.533\|GO:0044237_0.531\|GO:0044238_0.525\|GO:0043226_0.520	IPR000756+2107-2269+\|IPR001206+1838-1976_1842-1955_1842-1970+\|IPR016064+1841-2290+\|IPR017438+1840-1967+\|IPR037607+1556-2293+	SM00045+2107-2269+\|SM00046+1842-1970+	PF00609+2107-2269+Diacylglycerol_kinase_accessory_domain\|PF00781+1842-1955+Diacylglycerol_kinase_catalytic_domain	G3DSA:2.60.200.40:FF:000002+2106-2279+Diacylglycerol_kinase	PTHR11255+1556-2293+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-27;82-321;374-446;534-1169;1206-1406;1974-2096	6.000	28-81;322-373;447-533;1170-1205;1407-1973;2097-2567	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.960	276445.060	9.667	111.500	25.282	7.674	52.201	47.799	15.504	9.778	58.161

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	2253.387	3213.990	2989.386	2152.172	1995.381	2260.989	997.231	2972.559	2025.593	2121.230	2080.243

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.333	-0.716	-0.366	-0.141	—	-1.172	—	-1.434	—	—	—	—	—

No JSON data available for plots.

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