SCN Proteipedia

Hg_chrom9_TN10mRNA_16972

Organism: Heterodera glycines Gene Locus: chr9:2520087-2526890 Feature type: polypeptide

Protein Sequence

Length: 1,175

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.069	0.732	0.634	0.352	1.163	1.288	0.618	1.404	1.078	1.265	0.722	1.502	1.017	1.064	1.963	1.362	0.935	0.567	0.917	0.776	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16031	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KRKR,RKRRRR,RRRKRRR,GDEKKATRKWK,KKATRKWKEMALRARFK,RKFKGTDILQILRRKRML	—	—	—	—	—	—	0.000	—	—	0.105	0.164	0.118	0.158	0.220	0.496	0.296	0.009	0.727	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004908	1.000	2.000	Hsc_gene_13153.t1;Hsc_gene_13153.t2	Hsc_gene_13153.t1;Hsc_gene_13153.t2	—	P34410.3 TWiK family of potassium channels protein 7 [Caenorhabditis elegans]	KAI1728585.1 ion channel domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005267\|GO:0016020\|GO:0071805	GO:0008150_0.969\|GO:0009987_0.898\|GO:0051179_0.845\|GO:0006810_0.840\|GO:0051234_0.840\|GO:0003674_0.828\|GO:0005575_0.757\|GO:0110165_0.757\|GO:0016020_0.728\|GO:0006811_0.722\|GO:0055085_0.712\|GO:0006812_0.690\|GO:0030001_0.690\|GO:0034220_0.688\|GO:0098660_0.666\|GO:0005215_0.665\|GO:0015267_0.665\|GO:0022803_0.665\|GO:0022857_0.665\|GO:0005216_0.664\|GO:0015075_0.664\|GO:0071944_0.663\|GO:0006813_0.661\|GO:0098655_0.657\|GO:0005886_0.656\|GO:0098662_0.655\|GO:0005261_0.640\|GO:0008324_0.640\|GO:0015318_0.632\|GO:0071805_0.631\|GO:0022890_0.625\|GO:0046873_0.625\|GO:0005267_0.609\|GO:0015079_0.609	IPR003280+99-548_241-269_428-437+\|IPR013099+228-285_396-467+	—	PF07885+228-285_396-467+Ion_channel	—	PTHR11003+99-548+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-74;591-654;752-815;950-1175	3.000	75-590;655-751;816-949	6wlv_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.839	132881.260	10.300	62.500	27.660	10.298	51.064	48.936	17.191	10.468	46.553

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	254.306	374.085	773.229	261.041	64.200	69.072	28.186	237.705	79.190	375.379	248.441

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.818	-0.656	-1.458	-2.056	—	-1.285	1.683	-2.937	—	—	—	—	—

No JSON data available for plots.

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