Hg_chrom9_TN10mRNA_16973
Organism: Heterodera glycines Gene Locus: chr9:2527399-2531023 Feature type: polypeptideProtein Sequence
Length: 681
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.417 | 0.341 | 0.881 | 0.203 | 0.979 | 1.506 | 0.647 | 1.322 | 0.62 | 0.972 | 0.378 | 1.555 | 0.979 | 1.751 | 1.498 | 1.594 | 0.939 | 0.934 | 0.904 | 0.518 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16032
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRLPHSAVSASLRRTRT,RRQRLLKYVTDTAARKRMT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.353
|
0.189
|
0.008
|
0.529
|
0.044
|
0.201
|
0.084
|
0.074
|
0.185
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012586
|
1.000
|
1.000
|
Hsc_gene_13152.t1
|
Hsc_gene_13152.t1
|
— | — |
KAI1728585.1 ion channel domain-containing protein [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR48125+17-673+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;459-681
|
1.000
|
80-458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
73908.920
|
6.788
|
3.000
|
23.201
|
9.104
|
47.430
|
52.570
|
12.482
|
10.720
|
56.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
558.884
|
369.237
|
840.933
|
280.413
|
85.030
|
88.202
|
41.569
|
306.888
|
136.823
|
1587.897
|
966.008
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
-0.534
|
-1.475
|
-1.755
|
— |
-1.076
|
1.700
|
-2.745
|
— | — | — | — | — |
No JSON data available for plots.